miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17296 5' -59.5 NC_004367.1 + 130140 1.08 0.001476
Target:  5'- cUGCCAGCCCACAGACCCCCAUUCGGAc -3'
miRNA:   3'- -ACGGUCGGGUGUCUGGGGGUAAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 129757 0.66 0.749525
Target:  5'- aGCCAGCCaccgugucccCAGaACCCCCAa--GGGg -3'
miRNA:   3'- aCGGUCGGgu--------GUC-UGGGGGUaagCCU- -5'
17296 5' -59.5 NC_004367.1 + 128354 0.7 0.531459
Target:  5'- cGCCcGUcuCCAgGGACCCUCAgucUUCGGAg -3'
miRNA:   3'- aCGGuCG--GGUgUCUGGGGGU---AAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 127231 1.08 0.001476
Target:  5'- cUGCCAGCCCACAGACCCCCAUUCGGAc -3'
miRNA:   3'- -ACGGUCGGGUGUCUGGGGGUAAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 126848 0.66 0.749525
Target:  5'- aGCCAGCCaccgugucccCAGaACCCCCAa--GGGg -3'
miRNA:   3'- aCGGUCGGgu--------GUC-UGGGGGUaagCCU- -5'
17296 5' -59.5 NC_004367.1 + 125445 0.7 0.531459
Target:  5'- cGCCcGUcuCCAgGGACCCUCAgucUUCGGAg -3'
miRNA:   3'- aCGGuCG--GGUgUCUGGGGGU---AAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 124322 1.08 0.001476
Target:  5'- cUGCCAGCCCACAGACCCCCAUUCGGAc -3'
miRNA:   3'- -ACGGUCGGGUGUCUGGGGGUAAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 123939 0.66 0.749525
Target:  5'- aGCCAGCCaccgugucccCAGaACCCCCAa--GGGg -3'
miRNA:   3'- aCGGUCGGgu--------GUC-UGGGGGUaagCCU- -5'
17296 5' -59.5 NC_004367.1 + 122536 0.7 0.531459
Target:  5'- cGCCcGUcuCCAgGGACCCUCAgucUUCGGAg -3'
miRNA:   3'- aCGGuCG--GGUgUCUGGGGGU---AAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 121413 1.08 0.001476
Target:  5'- cUGCCAGCCCACAGACCCCCAUUCGGAc -3'
miRNA:   3'- -ACGGUCGGGUGUCUGGGGGUAAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 121030 0.66 0.749525
Target:  5'- aGCCAGCCaccgugucccCAGaACCCCCAa--GGGg -3'
miRNA:   3'- aCGGUCGGgu--------GUC-UGGGGGUaagCCU- -5'
17296 5' -59.5 NC_004367.1 + 116613 0.67 0.675151
Target:  5'- -cCCAGCCCAggccaGGACCCCgCGcuuguucccgguucaUUCGGGg -3'
miRNA:   3'- acGGUCGGGUg----UCUGGGG-GU---------------AAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 74152 0.67 0.691097
Target:  5'- uUGUUAGCCCAUGGGgaCCCGggUGGAu -3'
miRNA:   3'- -ACGGUCGGGUGUCUggGGGUaaGCCU- -5'
17296 5' -59.5 NC_004367.1 + 69493 0.7 0.521769
Target:  5'- -cCCGGCCCACAaccuGGCCCCauaUUGGAg -3'
miRNA:   3'- acGGUCGGGUGU----CUGGGGguaAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 56917 0.71 0.450706
Target:  5'- -cCCAGCCCAggccaGGACCCCgcgcuuguucccgguCAUUCGGGg -3'
miRNA:   3'- acGGUCGGGUg----UCUGGGG---------------GUAAGCCU- -5'
17296 5' -59.5 NC_004367.1 + 40647 0.71 0.429379
Target:  5'- gUGCUGGCCUacaACGGACCCgUAUUUGGu -3'
miRNA:   3'- -ACGGUCGGG---UGUCUGGGgGUAAGCCu -5'
17296 5' -59.5 NC_004367.1 + 29819 0.66 0.758965
Target:  5'- aGCC-GCCCgGCGGAUcgCCCCGgggUGGAc -3'
miRNA:   3'- aCGGuCGGG-UGUCUG--GGGGUaa-GCCU- -5'
17296 5' -59.5 NC_004367.1 + 23556 0.67 0.675151
Target:  5'- -cCCAGCCCAggccaGGACCCCgCGcuuguucccgguucaUUCGGGg -3'
miRNA:   3'- acGGUCGGGUg----UCUGGGG-GU---------------AAGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.