Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17297 | 3' | -64.5 | NC_004367.1 | + | 127696 | 1.07 | 0.000557 |
Target: 5'- aGAAGCCUGGGGCCUCAGGCCCGGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGCCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 124786 | 1.07 | 0.000557 |
Target: 5'- aGAAGCCUGGGGCCUCAGGCCCGGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGCCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 121877 | 1.07 | 0.000557 |
Target: 5'- aGAAGCCUGGGGCCUCAGGCCCGGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGCCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 130405 | 0.95 | 0.004694 |
Target: 5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 127496 | 0.95 | 0.004694 |
Target: 5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 121678 | 0.95 | 0.004694 |
Target: 5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 124587 | 0.95 | 0.004694 |
Target: 5'- aGAAGCCUGGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGACCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 130505 | 0.85 | 0.026271 |
Target: 5'- aGAAGCCUaGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGAcCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 127596 | 0.85 | 0.026271 |
Target: 5'- aGAAGCCUaGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGAcCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 124687 | 0.85 | 0.026271 |
Target: 5'- aGAAGCCUaGGGUCUCAGGCCCaGGACc -3' miRNA: 3'- -CUUCGGAcCCCGGAGUCCGGGcCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 121777 | 0.78 | 0.086773 |
Target: 5'- aGAAGCCUaGGGUCUCAGGCCCaGGcCc -3' miRNA: 3'- -CUUCGGAcCCCGGAGUCCGGGcCCuG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 23697 | 0.76 | 0.111756 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGACu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 23657 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 56998 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 57038 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 57118 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 57198 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 57158 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 57078 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 23617 | 0.74 | 0.166038 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCGGc-- -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGGCCcug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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