miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17297 3' -64.5 NC_004367.1 + 42105 0.66 0.461553
Target:  5'- aGAAcGCCcggcaGGGGCUgugUAGGCCCGGcACc -3'
miRNA:   3'- -CUU-CGGa----CCCCGGa--GUCCGGGCCcUG- -5'
17297 3' -64.5 NC_004367.1 + 116532 0.67 0.443961
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc--GGGCCCUg -5'
17297 3' -64.5 NC_004367.1 + 125685 0.67 0.443961
Target:  5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 116661 0.67 0.443961
Target:  5'- gGAGGCCUGGGcaCC-CGGaaaCCCGGGAg -3'
miRNA:   3'- -CUUCGGACCCc-GGaGUCc--GGGCCCUg -5'
17297 3' -64.5 NC_004367.1 + 128594 0.67 0.443961
Target:  5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3'
miRNA:   3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 121142 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 129869 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 126960 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 124051 0.67 0.409115
Target:  5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3'
miRNA:   3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5'
17297 3' -64.5 NC_004367.1 + 23447 0.68 0.401697
Target:  5'- cGGGCCUGGaGCCcCAcGGCC-GGGGCu -3'
miRNA:   3'- cUUCGGACCcCGGaGU-CCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 22451 0.69 0.325263
Target:  5'- aGggGCCgcggcaUGGGGCCgagUAGGCuuGGuACg -3'
miRNA:   3'- -CuuCGG------ACCCCGGa--GUCCGggCCcUG- -5'
17297 3' -64.5 NC_004367.1 + 56022 0.69 0.325263
Target:  5'- aGggGCCgcggcaUGGGGCCgagUAGGCuuGGuACg -3'
miRNA:   3'- -CuuCGG------ACCCCGGa--GUCCGggCCcUG- -5'
17297 3' -64.5 NC_004367.1 + 124194 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 130012 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 127103 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 120876 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 123785 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 126695 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 129604 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5'
17297 3' -64.5 NC_004367.1 + 121285 0.7 0.291301
Target:  5'- uAGGCCgGcGGGCCgccucCGGGCCaGGGGCu -3'
miRNA:   3'- cUUCGGaC-CCCGGa----GUCCGGgCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.