Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17297 | 3' | -64.5 | NC_004367.1 | + | 121142 | 0.67 | 0.409115 |
Target: 5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3' miRNA: 3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 129869 | 0.67 | 0.409115 |
Target: 5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3' miRNA: 3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 126960 | 0.67 | 0.409115 |
Target: 5'- -uAGCCUcGGGGUCUCAGuugggucGCCCaaagcggcagagGGGGCc -3' miRNA: 3'- cuUCGGA-CCCCGGAGUC-------CGGG------------CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116661 | 0.67 | 0.443961 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc--GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 125685 | 0.67 | 0.443961 |
Target: 5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3' miRNA: 3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 128594 | 0.67 | 0.443961 |
Target: 5'- --cGCuCUGGcaaGCCUCGGGCUCgccuGGGACu -3' miRNA: 3'- cuuCG-GACCc--CGGAGUCCGGG----CCCUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116532 | 0.67 | 0.443961 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc--GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 42105 | 0.66 | 0.461553 |
Target: 5'- aGAAcGCCcggcaGGGGCUgugUAGGCCCGGcACc -3' miRNA: 3'- -CUU-CGGa----CCCCGGa--GUCCGGGCCcUG- -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 117100 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 117048 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116996 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116944 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116892 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116840 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116788 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116711 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 116583 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 121780 | 0.66 | 0.48861 |
Target: 5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3' miRNA: 3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 124690 | 0.66 | 0.48861 |
Target: 5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3' miRNA: 3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5' |
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17297 | 3' | -64.5 | NC_004367.1 | + | 127599 | 0.66 | 0.48861 |
Target: 5'- uGAAGCCUGGGuccaauguagcuGUCU-GGGCuuGGGGu -3' miRNA: 3'- -CUUCGGACCC------------CGGAgUCCGggCCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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