Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17299 | 3' | -58.2 | NC_004367.1 | + | 145069 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 145397 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 146052 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 146380 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 147035 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 147363 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 147691 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 148018 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 148346 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 148674 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 149001 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17299 | 3' | -58.2 | NC_004367.1 | + | 149329 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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