miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17299 5' -46.4 NC_004367.1 + 10877 0.66 0.999873
Target:  5'- -cUCUGUGGCCAUAcgcaCCGAUGAc-- -3'
miRNA:   3'- ccAGAUACCGGUAUuc--GGUUAUUcuu -5'
17299 5' -46.4 NC_004367.1 + 7778 0.66 0.999806
Target:  5'- -cUCUcUGGCCAgcgagcaucuagcGGCCGGUGAGAc -3'
miRNA:   3'- ccAGAuACCGGUau-----------UCGGUUAUUCUu -5'
17299 5' -46.4 NC_004367.1 + 27879 0.68 0.998669
Target:  5'- cGUCUuucGUGGCC-UGGGCC--UAAGGAa -3'
miRNA:   3'- cCAGA---UACCGGuAUUCGGuuAUUCUU- -5'
17299 5' -46.4 NC_004367.1 + 52012 0.72 0.980064
Target:  5'- aGUCUGUGGCCAUAgacuuaagaucguaAGUaggaAAUAAGAc -3'
miRNA:   3'- cCAGAUACCGGUAU--------------UCGg---UUAUUCUu -5'
17299 5' -46.4 NC_004367.1 + 79722 0.73 0.969772
Target:  5'- cGUCUAuaguaaUGGCCAUAAGCCccccaccUAGGAGc -3'
miRNA:   3'- cCAGAU------ACCGGUAUUCGGuu-----AUUCUU- -5'
17299 5' -46.4 NC_004367.1 + 128756 0.94 0.158804
Target:  5'- gGGUCUAUGGCCAUAAGC-AAUAAGAAc -3'
miRNA:   3'- -CCAGAUACCGGUAUUCGgUUAUUCUU- -5'
17299 5' -46.4 NC_004367.1 + 122938 1.09 0.019809
Target:  5'- gGGUCUAUGGCCAUAAGCCAAUAAGAAc -3'
miRNA:   3'- -CCAGAUACCGGUAUUCGGUUAUUCUU- -5'
17299 5' -46.4 NC_004367.1 + 125847 1.09 0.019809
Target:  5'- gGGUCUAUGGCCAUAAGCCAAUAAGAAc -3'
miRNA:   3'- -CCAGAUACCGGUAUUCGGUUAUUCUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.