miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
173 3' -62.7 AC_000007.1 + 8963 0.66 0.268262
Target:  5'- cGCCACCGUgGAGcG-AGCCGGacGCGg -3'
miRNA:   3'- aCGGUGGCGgCUC-CgUUGGCCccUGC- -5'
173 3' -62.7 AC_000007.1 + 26241 0.66 0.260979
Target:  5'- cGCCGCCGCCacccacggacgagGAGGaauACU-GGGACa -3'
miRNA:   3'- aCGGUGGCGG-------------CUCCgu-UGGcCCCUGc -5'
173 3' -62.7 AC_000007.1 + 6616 0.66 0.255141
Target:  5'- cGCCuGCUGcCCGGGGUcuuuACCGuGGACGc -3'
miRNA:   3'- aCGG-UGGC-GGCUCCGu---UGGCcCCUGC- -5'
173 3' -62.7 AC_000007.1 + 23917 0.66 0.248151
Target:  5'- aGCCGCuuuuuugggggcgCGCgggGAGGCGGCggcacggcgaCGGGGACGa -3'
miRNA:   3'- aCGGUG-------------GCGg--CUCCGUUG----------GCCCCUGC- -5'
173 3' -62.7 AC_000007.1 + 26230 0.67 0.236452
Target:  5'- cGCgGCUGCUGAuagggcugcGGCGGCgGGGGGa- -3'
miRNA:   3'- aCGgUGGCGGCU---------CCGUUGgCCCCUgc -5'
173 3' -62.7 AC_000007.1 + 21870 0.67 0.223487
Target:  5'- cGCCugCGCCauagucaauacGGCcggucgcgaGACUGGGGGCGu -3'
miRNA:   3'- aCGGugGCGGcu---------CCG---------UUGGCCCCUGC- -5'
173 3' -62.7 AC_000007.1 + 11481 0.67 0.218924
Target:  5'- gGCgGCCGCCGAccuGGUAACCGcGuACGa -3'
miRNA:   3'- aCGgUGGCGGCU---CCGUUGGCcCcUGC- -5'
173 3' -62.7 AC_000007.1 + 13463 0.67 0.207865
Target:  5'- gGCUACCGCCcccuGGUuucuacACCGGGGGa- -3'
miRNA:   3'- aCGGUGGCGGcu--CCGu-----UGGCCCCUgc -5'
173 3' -62.7 AC_000007.1 + 26795 0.68 0.182312
Target:  5'- cUGCCGCUGCCGcuGCcGCCGgugcaguaGGGGCu -3'
miRNA:   3'- -ACGGUGGCGGCucCGuUGGC--------CCCUGc -5'
173 3' -62.7 AC_000007.1 + 16178 0.69 0.163911
Target:  5'- cGCCACCGCCGccgacccGGCAcuGCCGcccaacgcgcGGcGGCGg -3'
miRNA:   3'- aCGGUGGCGGCu------CCGU--UGGC----------CC-CUGC- -5'
173 3' -62.7 AC_000007.1 + 23821 0.69 0.159579
Target:  5'- -uCCGCCGUCGAGGUcgauGGCCGcGGGCu -3'
miRNA:   3'- acGGUGGCGGCUCCG----UUGGCcCCUGc -5'
173 3' -62.7 AC_000007.1 + 13138 0.7 0.147196
Target:  5'- aGCCGCgCGCUGGGGCAGgaGGacacGGGCa -3'
miRNA:   3'- aCGGUG-GCGGCUCCGUUggCC----CCUGc -5'
173 3' -62.7 AC_000007.1 + 11111 0.73 0.087223
Target:  5'- uUGCCGCUGCUGAGGag---GGGGGCGc -3'
miRNA:   3'- -ACGGUGGCGGCUCCguuggCCCCUGC- -5'
173 3' -62.7 AC_000007.1 + 12144 0.76 0.046779
Target:  5'- aGCCgACgCGCCcugGAGGCAGCUGGGGcCGg -3'
miRNA:   3'- aCGG-UG-GCGG---CUCCGUUGGCCCCuGC- -5'
173 3' -62.7 AC_000007.1 + 10358 0.76 0.04546
Target:  5'- gGCCAgCguagggugGCCGGGGCu-CCGGGGGCGa -3'
miRNA:   3'- aCGGUgG--------CGGCUCCGuuGGCCCCUGC- -5'
173 3' -62.7 AC_000007.1 + 16260 0.77 0.03939
Target:  5'- gGCCGCCGCCGcgcguuGGGCGgcaguGCCGGGucGGCGg -3'
miRNA:   3'- aCGGUGGCGGC------UCCGU-----UGGCCC--CUGC- -5'
173 3' -62.7 AC_000007.1 + 17301 1.07 0.000154
Target:  5'- cUGCCACCGCCGAGGCAACCGGGGACGu -3'
miRNA:   3'- -ACGGUGGCGGCUCCGUUGGCCCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.