miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17300 5' -58.2 NC_004367.1 + 135722 0.67 0.774851
Target:  5'- uUCCCCUUuu--CCCGCUAaGGCCAUCu -3'
miRNA:   3'- -AGGGGGAuucuGGGUGGUcCUGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 135145 0.66 0.83551
Target:  5'- gCgUCCUGAGcCCCGCaAGcGCCACCu -3'
miRNA:   3'- aGgGGGAUUCuGGGUGgUCcUGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 130444 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 130344 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 130040 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 129927 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17300 5' -58.2 NC_004367.1 + 129836 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17300 5' -58.2 NC_004367.1 + 129576 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 129411 1.11 0.001414
Target:  5'- gUCCCCCUAAGACCCACCAGGACCACCc -3'
miRNA:   3'- -AGGGGGAUUCUGGGUGGUCCUGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 127735 0.67 0.756292
Target:  5'- gUCCCCUuAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127635 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127535 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127435 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127131 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 127018 0.71 0.568508
Target:  5'- -gCCCCUGGGACCCgguuagGCCGGGAUa--- -3'
miRNA:   3'- agGGGGAUUCUGGG------UGGUCCUGgugg -5'
17300 5' -58.2 NC_004367.1 + 126927 0.66 0.83551
Target:  5'- aCCCCCaAGGGgCgGCCGGGuCCcuauCCu -3'
miRNA:   3'- aGGGGGaUUCUgGgUGGUCCuGGu---GG- -5'
17300 5' -58.2 NC_004367.1 + 126667 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 126502 1.11 0.001414
Target:  5'- gUCCCCCUAAGACCCACCAGGACCACCc -3'
miRNA:   3'- -AGGGGGAUUCUGGGUGGUCCUGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 124825 0.67 0.756292
Target:  5'- gUCCCCUuAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 124726 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.