miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17300 5' -58.2 NC_004367.1 + 121717 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 121617 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 124726 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127435 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127535 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 127635 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 130344 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 124526 0.67 0.774851
Target:  5'- gUCCCCUcAGACCCucuuCCAuGACucaCACCu -3'
miRNA:   3'- aGGGGGAuUCUGGGu---GGUcCUG---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 117179 0.68 0.708198
Target:  5'- gUCCCCaUGAG-CCguCCAGGAaaggCACCa -3'
miRNA:   3'- -AGGGGgAUUCuGGguGGUCCUg---GUGG- -5'
17300 5' -58.2 NC_004367.1 + 78611 0.68 0.715049
Target:  5'- aUCCCCC--AGAUuccggCCACCAaguaccugcacuuuGGACCACg -3'
miRNA:   3'- -AGGGGGauUCUG-----GGUGGU--------------CCUGGUGg -5'
17300 5' -58.2 NC_004367.1 + 41439 0.68 0.73731
Target:  5'- gUUCCaCUAuGACCCccGCCAGGgucgcagccaucACCACCg -3'
miRNA:   3'- -AGGGgGAUuCUGGG--UGGUCC------------UGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 116616 0.68 0.698358
Target:  5'- gCUCCCa---GCCCagGCCAGGACC-CCg -3'
miRNA:   3'- aGGGGGauucUGGG--UGGUCCUGGuGG- -5'
17300 5' -58.2 NC_004367.1 + 56920 0.68 0.698358
Target:  5'- gCUCCCa---GCCCagGCCAGGACC-CCg -3'
miRNA:   3'- aGGGGGauucUGGG--UGGUCCUGGuGG- -5'
17300 5' -58.2 NC_004367.1 + 23559 0.68 0.698358
Target:  5'- gCUCCCa---GCCCagGCCAGGACC-CCg -3'
miRNA:   3'- aGGGGGauucUGGG--UGGUCCUGGuGG- -5'
17300 5' -58.2 NC_004367.1 + 122764 0.68 0.717975
Target:  5'- -gCCUC--GGGCUCGCCGGGACUuacaGCCg -3'
miRNA:   3'- agGGGGauUCUGGGUGGUCCUGG----UGG- -5'
17300 5' -58.2 NC_004367.1 + 65755 0.68 0.746849
Target:  5'- aCCCCaCguaacgguguGGAUCCACCAcGGCCACg -3'
miRNA:   3'- aGGGG-Gau--------UCUGGGUGGUcCUGGUGg -5'
17300 5' -58.2 NC_004367.1 + 488 0.68 0.698358
Target:  5'- cUCCCCggcgGAGACUgAgU-GGACCACCg -3'
miRNA:   3'- aGGGGGa---UUCUGGgUgGuCCUGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 63277 0.69 0.668552
Target:  5'- aUCCCCaCUGGGugUguauCCAGGGCCAgUg -3'
miRNA:   3'- -AGGGG-GAUUCugGgu--GGUCCUGGUgG- -5'
17300 5' -58.2 NC_004367.1 + 129576 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5'
17300 5' -58.2 NC_004367.1 + 121313 0.69 0.655544
Target:  5'- aCCCaaCUGAGACCCcgagGCUAGGgacuaggccggcggGCCGCCu -3'
miRNA:   3'- aGGGg-GAUUCUGGG----UGGUCC--------------UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.