Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17301 | 3' | -67.1 | NC_004367.1 | + | 130083 | 1.09 | 0.000298 |
Target: 5'- cCAGGGGCAUCCGGGAGCCGGGCCCCCu -3' miRNA: 3'- -GUCCCCGUAGGCCCUCGGCCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 130008 | 0.7 | 0.255927 |
Target: 5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3' miRNA: 3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 129934 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 129898 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 129751 | 0.7 | 0.221632 |
Target: 5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3' miRNA: 3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 129608 | 0.7 | 0.255927 |
Target: 5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3' miRNA: 3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 127174 | 1.09 | 0.000298 |
Target: 5'- cCAGGGGCAUCCGGGAGCCGGGCCCCCu -3' miRNA: 3'- -GUCCCCGUAGGCCCUCGGCCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 127099 | 0.7 | 0.255927 |
Target: 5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3' miRNA: 3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 127025 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 126989 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 126842 | 0.7 | 0.221632 |
Target: 5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3' miRNA: 3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 126699 | 0.7 | 0.255927 |
Target: 5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3' miRNA: 3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 124265 | 1.09 | 0.000298 |
Target: 5'- cCAGGGGCAUCCGGGAGCCGGGCCCCCu -3' miRNA: 3'- -GUCCCCGUAGGCCCUCGGCCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 124190 | 0.7 | 0.255927 |
Target: 5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3' miRNA: 3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 124116 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 124080 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 123933 | 0.7 | 0.221632 |
Target: 5'- -cGGGGCAgccagccaccgugUCCccagaacccccaagGGGuGGCCGGGUCCCUa -3' miRNA: 3'- guCCCCGU-------------AGG--------------CCC-UCGGCCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 123789 | 0.7 | 0.255927 |
Target: 5'- cCGGcGGGCcgccUCCGGGccaggGGCUGGaCCCCCu -3' miRNA: 3'- -GUC-CCCGu---AGGCCC-----UCGGCCcGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 122760 | 0.66 | 0.398678 |
Target: 5'- --cGGGCucgCCGGGAcuuacaGCCGcgauGGCCCCa -3' miRNA: 3'- gucCCCGua-GGCCCU------CGGC----CCGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 121356 | 1.09 | 0.000298 |
Target: 5'- cCAGGGGCAUCCGGGAGCCGGGCCCCCu -3' miRNA: 3'- -GUCCCCGUAGGCCCUCGGCCCGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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