Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17301 | 3' | -67.1 | NC_004367.1 | + | 129898 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 116705 | 0.68 | 0.304763 |
Target: 5'- --cGGGUuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGuAGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 23467 | 0.68 | 0.306727 |
Target: 5'- -cGGGGCuggagccccacggCCGGGccuggagccccacGGCCGGGCCuggaguCCCa -3' miRNA: 3'- guCCCCGua-----------GGCCC-------------UCGGCCCGG------GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 121171 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 124080 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 126989 | 0.68 | 0.324838 |
Target: 5'- aAGcGGCAga-GGGGGCCcGGCUCCCg -3' miRNA: 3'- gUCcCCGUaggCCCUCGGcCCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 121207 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 56066 | 0.67 | 0.383074 |
Target: 5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3' miRNA: 3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 117222 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 22704 | 0.67 | 0.383074 |
Target: 5'- uCAGGGGuCAaCCGGGGGacacGUCCCCg -3' miRNA: 3'- -GUCCCC-GUaGGCCCUCggccCGGGGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 116910 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 116936 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 116962 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 116988 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 117248 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 117274 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 129934 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 127025 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 124116 | 0.67 | 0.34588 |
Target: 5'- -uGGGGguUCUGGGgacacgguGGCUGGcuGCCCCg -3' miRNA: 3'- guCCCCguAGGCCC--------UCGGCC--CGGGGg -5' |
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17301 | 3' | -67.1 | NC_004367.1 | + | 117196 | 0.67 | 0.375426 |
Target: 5'- --cGGGUuuUCCGGGuGCCcaGGCCuCCCg -3' miRNA: 3'- gucCCCGu-AGGCCCuCGGc-CCGG-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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