Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17302 | 3' | -51.3 | NC_004367.1 | + | 29419 | 0.66 | 0.990674 |
Target: 5'- cGGAcaUGGAGCGAAAccagGGGCCaUAGg -3' miRNA: 3'- cCCUc-ACUUCGCUUUuaa-CCCGG-GUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 25140 | 0.66 | 0.989897 |
Target: 5'- aGGGAGgugcuUGAAGCuAAAacuuguGUcacacuuguuaaaucUGGGCCCAGu -3' miRNA: 3'- -CCCUC-----ACUUCGcUUU------UA---------------ACCCGGGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 113425 | 0.66 | 0.989351 |
Target: 5'- --uAGUGAccGCGGAGAUUGGGCUgAa -3' miRNA: 3'- cccUCACUu-CGCUUUUAACCCGGgUc -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 85432 | 0.66 | 0.986098 |
Target: 5'- uGGGAGgcuaaacUGAGcaucccGUGGAGAUUGGGgCCAu -3' miRNA: 3'- -CCCUC-------ACUU------CGCUUUUAACCCgGGUc -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 7877 | 0.67 | 0.982544 |
Target: 5'- cGGGAccucuaccGUGAGGCGGAAAa-GGcGUCUAGg -3' miRNA: 3'- -CCCU--------CACUUCGCUUUUaaCC-CGGGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 142732 | 0.68 | 0.969961 |
Target: 5'- cGGGAccccUGGAGCGggGGUggcGuGGCCgGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAa--C-CCGGgUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 100056 | 0.69 | 0.947612 |
Target: 5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3' miRNA: 3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 100092 | 0.69 | 0.947612 |
Target: 5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3' miRNA: 3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 984 | 0.69 | 0.943037 |
Target: 5'- cGGGAGUGggGCuGGGuugccUGGGUCUu- -3' miRNA: 3'- -CCCUCACuuCG-CUUuua--ACCCGGGuc -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 145682 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 146009 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 146337 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 144699 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 144371 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 144043 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 143388 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 143060 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 142405 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 141422 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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17302 | 3' | -51.3 | NC_004367.1 | + | 141094 | 0.69 | 0.938211 |
Target: 5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3' miRNA: 3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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