miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17302 3' -51.3 NC_004367.1 + 29419 0.66 0.990674
Target:  5'- cGGAcaUGGAGCGAAAccagGGGCCaUAGg -3'
miRNA:   3'- cCCUc-ACUUCGCUUUuaa-CCCGG-GUC- -5'
17302 3' -51.3 NC_004367.1 + 25140 0.66 0.989897
Target:  5'- aGGGAGgugcuUGAAGCuAAAacuuguGUcacacuuguuaaaucUGGGCCCAGu -3'
miRNA:   3'- -CCCUC-----ACUUCGcUUU------UA---------------ACCCGGGUC- -5'
17302 3' -51.3 NC_004367.1 + 113425 0.66 0.989351
Target:  5'- --uAGUGAccGCGGAGAUUGGGCUgAa -3'
miRNA:   3'- cccUCACUu-CGCUUUUAACCCGGgUc -5'
17302 3' -51.3 NC_004367.1 + 85432 0.66 0.986098
Target:  5'- uGGGAGgcuaaacUGAGcaucccGUGGAGAUUGGGgCCAu -3'
miRNA:   3'- -CCCUC-------ACUU------CGCUUUUAACCCgGGUc -5'
17302 3' -51.3 NC_004367.1 + 7877 0.67 0.982544
Target:  5'- cGGGAccucuaccGUGAGGCGGAAAa-GGcGUCUAGg -3'
miRNA:   3'- -CCCU--------CACUUCGCUUUUaaCC-CGGGUC- -5'
17302 3' -51.3 NC_004367.1 + 142732 0.68 0.969961
Target:  5'- cGGGAccccUGGAGCGggGGUggcGuGGCCgGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAa--C-CCGGgUC- -5'
17302 3' -51.3 NC_004367.1 + 100056 0.69 0.947612
Target:  5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3'
miRNA:   3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5'
17302 3' -51.3 NC_004367.1 + 100092 0.69 0.947612
Target:  5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3'
miRNA:   3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5'
17302 3' -51.3 NC_004367.1 + 984 0.69 0.943037
Target:  5'- cGGGAGUGggGCuGGGuugccUGGGUCUu- -3'
miRNA:   3'- -CCCUCACuuCG-CUUuua--ACCCGGGuc -5'
17302 3' -51.3 NC_004367.1 + 145682 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 146009 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 146337 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 144699 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 144371 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 144043 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 143388 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 143060 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 142405 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 141422 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 141094 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.