miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17302 3' -51.3 NC_004367.1 + 143060 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 142732 0.68 0.969961
Target:  5'- cGGGAccccUGGAGCGggGGUggcGuGGCCgGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAa--C-CCGGgUC- -5'
17302 3' -51.3 NC_004367.1 + 142405 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 142077 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 141749 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 141422 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 141094 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 140766 0.69 0.938211
Target:  5'- cGGGAccccUGGAGCGggGGU-GGGCguggCCGGg -3'
miRNA:   3'- -CCCUc---ACUUCGCuuUUAaCCCG----GGUC- -5'
17302 3' -51.3 NC_004367.1 + 130174 1.12 0.004784
Target:  5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3'
miRNA:   3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5'
17302 3' -51.3 NC_004367.1 + 127265 1.12 0.004784
Target:  5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3'
miRNA:   3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5'
17302 3' -51.3 NC_004367.1 + 124356 1.12 0.004784
Target:  5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3'
miRNA:   3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5'
17302 3' -51.3 NC_004367.1 + 121447 1.12 0.004784
Target:  5'- gGGGAGUGAAGCGAAAAUUGGGCCCAGg -3'
miRNA:   3'- -CCCUCACUUCGCUUUUAACCCGGGUC- -5'
17302 3' -51.3 NC_004367.1 + 118027 0.74 0.732009
Target:  5'- cGGGAucUGGAGUGAAAucugUGGGCCCu- -3'
miRNA:   3'- -CCCUc-ACUUCGCUUUua--ACCCGGGuc -5'
17302 3' -51.3 NC_004367.1 + 113425 0.66 0.989351
Target:  5'- --uAGUGAccGCGGAGAUUGGGCUgAa -3'
miRNA:   3'- cccUCACUu-CGCUUUUAACCCGGgUc -5'
17302 3' -51.3 NC_004367.1 + 100092 0.69 0.947612
Target:  5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3'
miRNA:   3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5'
17302 3' -51.3 NC_004367.1 + 100056 0.69 0.947612
Target:  5'- aGGGGUGGgcuGGgGAGGAggggUGGGCUgGGg -3'
miRNA:   3'- cCCUCACU---UCgCUUUUa---ACCCGGgUC- -5'
17302 3' -51.3 NC_004367.1 + 86298 0.73 0.790943
Target:  5'- uGGGuG-GAAGCGAAGGUauGGCCCAc -3'
miRNA:   3'- -CCCuCaCUUCGCUUUUAacCCGGGUc -5'
17302 3' -51.3 NC_004367.1 + 85432 0.66 0.986098
Target:  5'- uGGGAGgcuaaacUGAGcaucccGUGGAGAUUGGGgCCAu -3'
miRNA:   3'- -CCCUC-------ACUU------CGCUUUUAACCCgGGUc -5'
17302 3' -51.3 NC_004367.1 + 55994 0.7 0.910248
Target:  5'- uGGGGGaUGggGCGAccuacauuugGGAagGGGCCgCGGc -3'
miRNA:   3'- -CCCUC-ACuuCGCU----------UUUaaCCCGG-GUC- -5'
17302 3' -51.3 NC_004367.1 + 31447 0.7 0.9222
Target:  5'- cGGGcGUGAaugaGGCGGAGAUUGGucuucagaGCCCu- -3'
miRNA:   3'- -CCCuCACU----UCGCUUUUAACC--------CGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.