Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17303 | 3' | -64.5 | NC_004367.1 | + | 22451 | 0.69 | 0.325263 |
Target: 5'- aGggGCCgcggcaUGGGGCCgagUAGGCuuGGuACg -3' miRNA: 3'- -CuuCGG------ACCCCGGa--GUCCGggCCcUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 23447 | 0.68 | 0.401697 |
Target: 5'- cGGGCCUGGaGCCcCAcGGCC-GGGGCu -3' miRNA: 3'- cUUCGGACCcCGGaGU-CCGGgCCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 23617 | 0.74 | 0.166038 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCGGc-- -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGGCCcug -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 23657 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 23697 | 0.76 | 0.111756 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGACu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 25420 | 0.66 | 0.497794 |
Target: 5'- aGGGCgUGGuGGUUUC-GGCCUGGGGg -3' miRNA: 3'- cUUCGgACC-CCGGAGuCCGGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 42105 | 0.66 | 0.461553 |
Target: 5'- aGAAcGCCcggcaGGGGCUgugUAGGCCCGGcACc -3' miRNA: 3'- -CUU-CGGa----CCCCGGa--GUCCGGGCCcUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 56022 | 0.69 | 0.325263 |
Target: 5'- aGggGCCgcggcaUGGGGCCgagUAGGCuuGGuACg -3' miRNA: 3'- -CuuCGG------ACCCCGGa--GUCCGggCCcUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 56998 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 57038 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 57078 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 57118 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 57158 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 57198 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116532 | 0.67 | 0.443961 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc--GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116583 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116661 | 0.67 | 0.443961 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc--GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116711 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116788 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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17303 | 3' | -64.5 | NC_004367.1 | + | 116840 | 0.66 | 0.479506 |
Target: 5'- gGAGGCCUGGGcaCC-CGGaaaaCCCGGGAg -3' miRNA: 3'- -CUUCGGACCCc-GGaGUCc---GGGCCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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