Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17303 | 5' | -55.3 | NC_004367.1 | + | 124752 | 0.92 | 0.034024 |
Target: 5'- cAUAA-CCGGCUUCAGGCCUCCACUUAg -3' miRNA: 3'- -UAUUgGGCCGAAGUCCGGAGGUGAAU- -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 127760 | 0.84 | 0.118182 |
Target: 5'- -gGACCCaGGCUUCAGGCCUCC-CUUu -3' miRNA: 3'- uaUUGGG-CCGAAGUCCGGAGGuGAAu -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 121942 | 0.81 | 0.189996 |
Target: 5'- -gGACCCaGGCUUCAGGCCUCUcCUUu -3' miRNA: 3'- uaUUGGG-CCGAAGUCCGGAGGuGAAu -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 124851 | 0.81 | 0.189996 |
Target: 5'- -gGACCCaGGCUUCAGGCCUCUcCUUu -3' miRNA: 3'- uaUUGGG-CCGAAGUCCGGAGGuGAAu -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 122041 | 0.71 | 0.59719 |
Target: 5'- -aAACCCGGCUUCAcGCCUCUc---- -3' miRNA: 3'- uaUUGGGCCGAAGUcCGGAGGugaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 124950 | 0.71 | 0.59719 |
Target: 5'- -aAACCCGGCUUCAcGCCUCUc---- -3' miRNA: 3'- uaUUGGGCCGAAGUcCGGAGGugaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 127859 | 0.71 | 0.59719 |
Target: 5'- -aAACCCGGCUUCAcGCCUCUc---- -3' miRNA: 3'- uaUUGGGCCGAAGUcCGGAGGugaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 130538 | 0.68 | 0.772448 |
Target: 5'- -aGAUCUcuaCUUCAGGCCUCCACa-- -3' miRNA: 3'- uaUUGGGcc-GAAGUCCGGAGGUGaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 72962 | 0.67 | 0.860807 |
Target: 5'- ---cCCCuGCUUCuGGCCUCCcCUa- -3' miRNA: 3'- uauuGGGcCGAAGuCCGGAGGuGAau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 135907 | 0.66 | 0.868565 |
Target: 5'- uUGAUCCGGCaauugUUGGGCCgucuUCCACa-- -3' miRNA: 3'- uAUUGGGCCGa----AGUCCGG----AGGUGaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57203 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57183 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57163 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57143 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57123 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57103 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57083 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57063 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57043 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 57003 | 0.66 | 0.903867 |
Target: 5'- -aGGCCCGGCcgUGGGgCUCCAg--- -3' miRNA: 3'- uaUUGGGCCGaaGUCCgGAGGUgaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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