miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17303 5' -55.3 NC_004367.1 + 130271 1.04 0.004915
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUGg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 130371 1.05 0.004511
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 130471 1.05 0.004511
Target:  5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3'
miRNA:   3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5'
17303 5' -55.3 NC_004367.1 + 130538 0.68 0.772448
Target:  5'- -aGAUCUcuaCUUCAGGCCUCCACa-- -3'
miRNA:   3'- uaUUGGGcc-GAAGUCCGGAGGUGaau -5'
17303 5' -55.3 NC_004367.1 + 135907 0.66 0.868565
Target:  5'- uUGAUCCGGCaauugUUGGGCCgucuUCCACa-- -3'
miRNA:   3'- uAUUGGGCCGa----AGUCCGG----AGGUGaau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.