Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17303 | 5' | -55.3 | NC_004367.1 | + | 130271 | 1.04 | 0.004915 |
Target: 5'- cAUAACCCGGCUUCAGGCCUCCACUUGg -3' miRNA: 3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 130371 | 1.05 | 0.004511 |
Target: 5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3' miRNA: 3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 130471 | 1.05 | 0.004511 |
Target: 5'- cAUAACCCGGCUUCAGGCCUCCACUUAg -3' miRNA: 3'- -UAUUGGGCCGAAGUCCGGAGGUGAAU- -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 130538 | 0.68 | 0.772448 |
Target: 5'- -aGAUCUcuaCUUCAGGCCUCCACa-- -3' miRNA: 3'- uaUUGGGcc-GAAGUCCGGAGGUGaau -5' |
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17303 | 5' | -55.3 | NC_004367.1 | + | 135907 | 0.66 | 0.868565 |
Target: 5'- uUGAUCCGGCaauugUUGGGCCgucuUCCACa-- -3' miRNA: 3'- uAUUGGGCCGa----AGUCCGG----AGGUGaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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