Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 38145 | 0.66 | 0.855233 |
|
Target: 5'- uUUCUUCACCUg-CCGUgCGUUAAGGCg -3' miRNA: 3'- uAAGGGGUGGAagGGCG-GCGAUUCUG- -5' |
|||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 1143 | 0.66 | 0.847288 |
|
Target: 5'- --gCCCCAC--UCCCGCCGgUGuuuaucGACa -3' miRNA: 3'- uaaGGGGUGgaAGGGCGGCgAUu-----CUG- -5' |
|||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 74320 | 0.66 | 0.839145 |
|
Target: 5'- -aUCCCC-CUaagUUCCCcacuGCCGC-AGGACa -3' miRNA: 3'- uaAGGGGuGG---AAGGG----CGGCGaUUCUG- -5' |
|||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 106686 | 0.66 | 0.83081 |
|
Target: 5'- ---aCCCACCUgccccccagcCCCGUCGCaaccacgaUGAGACa -3' miRNA: 3'- uaagGGGUGGAa---------GGGCGGCG--------AUUCUG- -5' |
|||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 122690 | 1.06 | 0.002889 |
|
Target: 5'- cAUUCCCCACCUUCCCGCCGCUAAGACc -3' miRNA: 3'- -UAAGGGGUGGAAGGGCGGCGAUUCUG- -5' |
|||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 125599 | 1.06 | 0.002889 |
|
Target: 5'- cAUUCCCCACCUUCCCGCCGCUAAGACc -3' miRNA: 3'- -UAAGGGGUGGAAGGGCGGCGAUUCUG- -5' |
|||||||
| 17304 | 3' | -57 | NC_004367.1 | + | 128508 | 1.06 | 0.002889 |
|
Target: 5'- cAUUCCCCACCUUCCCGCCGCUAAGACc -3' miRNA: 3'- -UAAGGGGUGGAAGGGCGGCGAUUCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home