Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17305 | 3' | -58.2 | NC_004367.1 | + | 141137 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 141465 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 141792 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 142120 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 142448 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 142775 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 143103 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 145397 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 145069 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 144741 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 144414 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 144086 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 143758 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 143431 | 0.69 | 0.634079 |
Target: 5'- gGCGuCCCCcCGGCgCGCUGCUcgCGAg -3' miRNA: 3'- -CGUuGGGGuGCCGgGUGACGGaaGUU- -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 23475 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 57036 | 0.68 | 0.67497 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUaCAc -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaGUu -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 129830 | 0.72 | 0.437807 |
Target: 5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3' miRNA: 3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 126921 | 0.72 | 0.437807 |
Target: 5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3' miRNA: 3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 124012 | 0.72 | 0.437807 |
Target: 5'- cCAGCCCCuggcccggagGCGGCCCGCcgGCCUa--- -3' miRNA: 3'- cGUUGGGG----------UGCCGGGUGa-CGGAaguu -5' |
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17305 | 3' | -58.2 | NC_004367.1 | + | 57016 | 0.67 | 0.744825 |
Target: 5'- -gAGCCCCACGGCCgg--GCCUg--- -3' miRNA: 3'- cgUUGGGGUGCCGGgugaCGGAaguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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