Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 10877 | 0.66 | 0.999873 |
Target: 5'- -cUCUGUGGCCAUAcgcaCCGAUGAc-- -3' miRNA: 3'- ccAGAUACCGGUAUuc--GGUUAUUcuu -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 7778 | 0.66 | 0.999806 |
Target: 5'- -cUCUcUGGCCAgcgagcaucuagcGGCCGGUGAGAc -3' miRNA: 3'- ccAGAuACCGGUau-----------UCGGUUAUUCUu -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 27879 | 0.68 | 0.998669 |
Target: 5'- cGUCUuucGUGGCC-UGGGCC--UAAGGAa -3' miRNA: 3'- cCAGA---UACCGGuAUUCGGuuAUUCUU- -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 52012 | 0.72 | 0.980064 |
Target: 5'- aGUCUGUGGCCAUAgacuuaagaucguaAGUaggaAAUAAGAc -3' miRNA: 3'- cCAGAUACCGGUAU--------------UCGg---UUAUUCUu -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 79722 | 0.73 | 0.969772 |
Target: 5'- cGUCUAuaguaaUGGCCAUAAGCCccccaccUAGGAGc -3' miRNA: 3'- cCAGAU------ACCGGUAUUCGGuu-----AUUCUU- -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 128756 | 0.94 | 0.158804 |
Target: 5'- gGGUCUAUGGCCAUAAGC-AAUAAGAAc -3' miRNA: 3'- -CCAGAUACCGGUAUUCGgUUAUUCUU- -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 122938 | 1.09 | 0.019809 |
Target: 5'- gGGUCUAUGGCCAUAAGCCAAUAAGAAc -3' miRNA: 3'- -CCAGAUACCGGUAUUCGGUUAUUCUU- -5' |
|||||||
17305 | 5' | -46.4 | NC_004367.1 | + | 125847 | 1.09 | 0.019809 |
Target: 5'- gGGUCUAUGGCCAUAAGCCAAUAAGAAc -3' miRNA: 3'- -CCAGAUACCGGUAUUCGGUUAUUCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home