Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 130084 | 0.68 | 0.532318 |
Target: 5'- cCCAGGGgCAUCCgGGAgccggGCCCCCu-- -3' miRNA: 3'- uGGUCCUgGUGGGaCCU-----CGGGGGuuc -5' |
|||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 68168 | 0.68 | 0.502917 |
Target: 5'- uCC-GGACCACgggugucuugaagCCUGG-GCCuCCCAAGg -3' miRNA: 3'- uGGuCCUGGUG-------------GGACCuCGG-GGGUUC- -5' |
|||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 96189 | 0.68 | 0.48525 |
Target: 5'- uCCAGGAUgcaCAUUgaGGGGCUCCCGGGa -3' miRNA: 3'- uGGUCCUG---GUGGgaCCUCGGGGGUUC- -5' |
|||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 56943 | 0.73 | 0.261927 |
Target: 5'- uCCAGaACCGCCCagcuccUGGAGCUCCCAGc -3' miRNA: 3'- uGGUCcUGGUGGG------ACCUCGGGGGUUc -5' |
|||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 116639 | 0.73 | 0.261927 |
Target: 5'- uCCAGaACCGCCCagcuccUGGAGCUCCCAGc -3' miRNA: 3'- uGGUCcUGGUGGG------ACCUCGGGGGUUc -5' |
|||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 23582 | 0.73 | 0.250059 |
Target: 5'- cCCAGaACCGCCCagcuccUGGAGCUCCCAGc -3' miRNA: 3'- uGGUCcUGGUGGG------ACCUCGGGGGUUc -5' |
|||||||
17306 | 3' | -61.8 | NC_004367.1 | + | 5908 | 0.66 | 0.650226 |
Target: 5'- uGCCAGGACCugaagAUCCUGucacauccGGGCCCgCCcAGc -3' miRNA: 3'- -UGGUCCUGG-----UGGGAC--------CUCGGG-GGuUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home