miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17306 5' -55.9 NC_004367.1 + 43520 0.66 0.906272
Target:  5'- gGGCCgaagagccgAGUgUCCCCAgguuaacguauuuUGGACcCCCGa -3'
miRNA:   3'- -CCGGa--------UCAgAGGGGU-------------AUCUGaGGGUa -5'
17306 5' -55.9 NC_004367.1 + 119878 0.67 0.824916
Target:  5'- aGCCUAGUCUCUCCAgGGGua-CCAg -3'
miRNA:   3'- cCGGAUCAGAGGGGUaUCUgagGGUa -5'
17306 5' -55.9 NC_004367.1 + 23488 0.69 0.721672
Target:  5'- gGGCCUGGag-CCCCAcggccgggccUGGAgUCCCAc -3'
miRNA:   3'- -CCGGAUCagaGGGGU----------AUCUgAGGGUa -5'
17306 5' -55.9 NC_004367.1 + 69624 0.71 0.650225
Target:  5'- aGGCCUGGUaCUCCCCugAGAUguUCCUu- -3'
miRNA:   3'- -CCGGAUCA-GAGGGGuaUCUG--AGGGua -5'
17306 5' -55.9 NC_004367.1 + 123449 0.74 0.47865
Target:  5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3'
miRNA:   3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5'
17306 5' -55.9 NC_004367.1 + 126358 0.74 0.47865
Target:  5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3'
miRNA:   3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5'
17306 5' -55.9 NC_004367.1 + 129267 0.74 0.47865
Target:  5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3'
miRNA:   3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5'
17306 5' -55.9 NC_004367.1 + 120540 0.74 0.47865
Target:  5'- uGCCUcaccacaaAGUUUCCUUAUGGACUCCCu- -3'
miRNA:   3'- cCGGA--------UCAGAGGGGUAUCUGAGGGua -5'
17306 5' -55.9 NC_004367.1 + 129360 1.08 0.002943
Target:  5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3'
miRNA:   3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5'
17306 5' -55.9 NC_004367.1 + 126451 1.08 0.002943
Target:  5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3'
miRNA:   3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5'
17306 5' -55.9 NC_004367.1 + 120633 1.08 0.002943
Target:  5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3'
miRNA:   3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5'
17306 5' -55.9 NC_004367.1 + 123542 1.08 0.002943
Target:  5'- gGGCCUAGUCUCCCCAUAGACUCCCAUa -3'
miRNA:   3'- -CCGGAUCAGAGGGGUAUCUGAGGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.