Results 61 - 68 of 68 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 121777 | 0.78 | 0.086773 |
Target: 5'- aGAAGCCUaGGGUCUCAGGCCCaGGcCc -3' miRNA: 3'- -CUUCGGAcCCCGGAGUCCGGGcCCuG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 23697 | 0.76 | 0.111756 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGACu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 57198 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 57158 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 57118 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 57078 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 57038 | 0.75 | 0.129833 |
Target: 5'- -cGGCCgUGGGGCUcCAGGCCCggccguGGGGCu -3' miRNA: 3'- cuUCGG-ACCCCGGaGUCCGGG------CCCUG- -5' |
|||||||
17309 | 3' | -64.5 | NC_004367.1 | + | 25420 | 0.66 | 0.497794 |
Target: 5'- aGGGCgUGGuGGUUUC-GGCCUGGGGg -3' miRNA: 3'- cUUCGgACC-CCGGAGuCCGGGCCCUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home