miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17310 5' -57.7 NC_004367.1 + 28261 0.67 0.736835
Target:  5'- aUGAUCCAuuacuacaaAGGgGCUaUGGGGGAcGGUAg -3'
miRNA:   3'- -ACUAGGU---------UCCgCGG-GCCCCUUuCCAU- -5'
17310 5' -57.7 NC_004367.1 + 121854 0.68 0.707128
Target:  5'- gGGUCUAAGGgGaCCaGGGAGAGGc- -3'
miRNA:   3'- aCUAGGUUCCgCgGGcCCCUUUCCau -5'
17310 5' -57.7 NC_004367.1 + 124763 0.68 0.707128
Target:  5'- gGGUCUAAGGgGaCCaGGGAGAGGc- -3'
miRNA:   3'- aCUAGGUUCCgCgGGcCCCUUUCCau -5'
17310 5' -57.7 NC_004367.1 + 127673 0.68 0.707128
Target:  5'- gGGUCUAAGGgGaCCaGGGAGAGGc- -3'
miRNA:   3'- aCUAGGUUCCgCgGGcCCCUUUCCau -5'
17310 5' -57.7 NC_004367.1 + 122655 0.95 0.01541
Target:  5'- gUGAUCCAAGGCGCCCGGGaGAAGGUAc -3'
miRNA:   3'- -ACUAGGUUCCGCGGGCCCcUUUCCAU- -5'
17310 5' -57.7 NC_004367.1 + 125564 0.95 0.01541
Target:  5'- gUGAUCCAAGGCGCCCGGGaGAAGGUAc -3'
miRNA:   3'- -ACUAGGUUCCGCGGGCCCcUUUCCAU- -5'
17310 5' -57.7 NC_004367.1 + 128473 0.95 0.01541
Target:  5'- gUGAUCCAAGGCGCCCGGGaGAAGGUAc -3'
miRNA:   3'- -ACUAGGUUCCGCGGGCCCcUUUCCAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.