Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 5' | -46.1 | NC_004367.1 | + | 133078 | 0.84 | 0.541185 |
Target: 5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 132886 | 0.72 | 0.981269 |
Target: 5'- gGCCAACAAAUGUgGGCaCCAcCAu-- -3' miRNA: 3'- -CGGUUGUUUACAaCCGcGGUuGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133486 | 0.71 | 0.993681 |
Target: 5'- uGCCAACGucUGUUGGCGagGACccuugAGACu -3' miRNA: 3'- -CGGUUGUuuACAACCGCggUUG-----UUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133294 | 0.66 | 0.999961 |
Target: 5'- cGgCAACGuuUGUUGGCGaCGACccuugAGACu -3' miRNA: 3'- -CgGUUGUuuACAACCGCgGUUG-----UUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133342 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133430 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 132950 | 0.79 | 0.779914 |
Target: 5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133535 | 0.79 | 0.779914 |
Target: 5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133694 | 0.76 | 0.92026 |
Target: 5'- aCCAACAuuUGcUGGUGCCAACGu-- -3' miRNA: 3'- cGGUUGUuuACaACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 126828 | 0.72 | 0.981269 |
Target: 5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3' miRNA: 3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133747 | 0.73 | 0.976353 |
Target: 5'- gGCCAACGuuUGUUGGUGCUuuggucACAGu- -3' miRNA: 3'- -CGGUUGUuuACAACCGCGGu-----UGUUug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 31090 | 0.76 | 0.92026 |
Target: 5'- uCCGACAAAUGgaGG-GCCGugAGACg -3' miRNA: 3'- cGGUUGUUUACaaCCgCGGUugUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133118 | 0.84 | 0.541185 |
Target: 5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 121010 | 0.72 | 0.981269 |
Target: 5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3' miRNA: 3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133038 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 2934 | 0.76 | 0.92026 |
Target: 5'- cCCAAUAGA---UGGCGCCAACAuACc -3' miRNA: 3'- cGGUUGUUUacaACCGCGGUUGUuUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 123919 | 0.72 | 0.981269 |
Target: 5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3' miRNA: 3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 101574 | 0.71 | 0.991498 |
Target: 5'- cGCCGgaGCAAuaGUgGGCGCCAAUGAGa -3' miRNA: 3'- -CGGU--UGUUuaCAaCCGCGGUUGUUUg -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133254 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133591 | 0.8 | 0.769781 |
Target: 5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3' miRNA: 3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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