Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 5' | -46.1 | NC_004367.1 | + | 133816 | 0.78 | 0.84587 |
Target: 5'- gGCCAAgGAAUGUUGcCaCCAACAAACg -3' miRNA: 3'- -CGGUUgUUUACAACcGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 84656 | 0.77 | 0.870908 |
Target: 5'- aGCCAACAAA---UGGCGCCGuACAGGu -3' miRNA: 3'- -CGGUUGUUUacaACCGCGGU-UGUUUg -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133068 | 0.77 | 0.89368 |
Target: 5'- cGUCAACAAAUGgUGGUGCCcACAu-- -3' miRNA: 3'- -CGGUUGUUUACaACCGCGGuUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 31090 | 0.76 | 0.92026 |
Target: 5'- uCCGACAAAUGgaGG-GCCGugAGACg -3' miRNA: 3'- cGGUUGUUUACaaCCgCGGUugUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133694 | 0.76 | 0.92026 |
Target: 5'- aCCAACAuuUGcUGGUGCCAACGu-- -3' miRNA: 3'- cGGUUGUuuACaACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 2934 | 0.76 | 0.92026 |
Target: 5'- cCCAAUAGA---UGGCGCCAACAuACc -3' miRNA: 3'- cGGUUGUUUacaACCGCGGUUGUuUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 52261 | 0.75 | 0.931874 |
Target: 5'- aGCCAGCAGAUaucGUUGaGCGCUGGCGccuggAACa -3' miRNA: 3'- -CGGUUGUUUA---CAAC-CGCGGUUGU-----UUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 44055 | 0.75 | 0.944327 |
Target: 5'- uCCAGCGGGUGUUGGaaggaaacgcucagGCCGGCAGAa -3' miRNA: 3'- cGGUUGUUUACAACCg-------------CGGUUGUUUg -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133747 | 0.73 | 0.976353 |
Target: 5'- gGCCAACGuuUGUUGGUGCUuuggucACAGu- -3' miRNA: 3'- -CGGUUGUuuACAACCGCGGu-----UGUUug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 121010 | 0.72 | 0.981269 |
Target: 5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3' miRNA: 3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 126828 | 0.72 | 0.981269 |
Target: 5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3' miRNA: 3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 123919 | 0.72 | 0.981269 |
Target: 5'- gGCCAACuAGAUGUcggGGCaGCCAGCc--- -3' miRNA: 3'- -CGGUUG-UUUACAa--CCG-CGGUUGuuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 132886 | 0.72 | 0.981269 |
Target: 5'- gGCCAACAAAUGUgGGCaCCAcCAu-- -3' miRNA: 3'- -CGGUUGUUUACAaCCGcGGUuGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 7649 | 0.72 | 0.988758 |
Target: 5'- uGCUAGuuaaucCGAGUGUUGGCGUgG-CAAACa -3' miRNA: 3'- -CGGUU------GUUUACAACCGCGgUuGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 101574 | 0.71 | 0.991498 |
Target: 5'- cGCCGgaGCAAuaGUgGGCGCCAAUGAGa -3' miRNA: 3'- -CGGU--UGUUuaCAaCCGCGGUUGUUUg -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133486 | 0.71 | 0.993681 |
Target: 5'- uGCCAACGucUGUUGGCGagGACccuugAGACu -3' miRNA: 3'- -CGGUUGUuuACAACCGCggUUG-----UUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 52458 | 0.7 | 0.997231 |
Target: 5'- aCCGAUggGaguUGUUccaGGCGCCAGCGcucAACg -3' miRNA: 3'- cGGUUGuuU---ACAA---CCGCGGUUGU---UUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 29824 | 0.69 | 0.997689 |
Target: 5'- gGCCAACAuaguuAGUGUcaUGGaCGCCcACGAu- -3' miRNA: 3'- -CGGUUGU-----UUACA--ACC-GCGGuUGUUug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 107941 | 0.69 | 0.998044 |
Target: 5'- aCCAgcguuggacgggcACAAGUGcgGGCGCCcccCAGACa -3' miRNA: 3'- cGGU-------------UGUUUACaaCCGCGGuu-GUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 106812 | 0.69 | 0.998416 |
Target: 5'- cGCCAuCAAAcGUUGGCGgCGGCc--- -3' miRNA: 3'- -CGGUuGUUUaCAACCGCgGUUGuuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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