Results 41 - 60 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17315 | 5' | -46.1 | NC_004367.1 | + | 84656 | 0.77 | 0.870908 |
Target: 5'- aGCCAACAAA---UGGCGCCGuACAGGu -3' miRNA: 3'- -CGGUUGUUUacaACCGCGGU-UGUUUg -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133816 | 0.78 | 0.84587 |
Target: 5'- gGCCAAgGAAUGUUGcCaCCAACAAACg -3' miRNA: 3'- -CGGUUgUUUACAACcGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133535 | 0.79 | 0.779914 |
Target: 5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 132950 | 0.79 | 0.779914 |
Target: 5'- gGgCAACGuuUGUUGGUGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133591 | 0.8 | 0.769781 |
Target: 5'- uGCCAACGuuUGUUGGCGaggacaCAugAGACu -3' miRNA: 3'- -CGGUUGUuuACAACCGCg-----GUugUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133857 | 0.8 | 0.759502 |
Target: 5'- aCCAGCAAAUGUUGGUcuCCAGCAAc- -3' miRNA: 3'- cGGUUGUUUACAACCGc-GGUUGUUug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133430 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133038 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133254 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133342 | 0.83 | 0.573851 |
Target: 5'- gGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133078 | 0.84 | 0.541185 |
Target: 5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133118 | 0.84 | 0.541185 |
Target: 5'- cGgCAACGuuUGUUGGCGCCAACAu-- -3' miRNA: 3'- -CgGUUGUuuACAACCGCGGUUGUuug -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133652 | 0.88 | 0.381609 |
Target: 5'- cGCCAACAGAcGUUGGCaCUAACAAACg -3' miRNA: 3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133756 | 0.92 | 0.219154 |
Target: 5'- cGCCAACAAAcGUUGGCaCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUaCAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133132 | 1.01 | 0.071276 |
Target: 5'- gGCCAACAAAUGUUGGCaCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133717 | 1.01 | 0.067243 |
Target: 5'- aGCCAACAAAUGUUGGCaCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGcGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133300 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133436 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133260 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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17315 | 5' | -46.1 | NC_004367.1 | + | 133612 | 1.14 | 0.011311 |
Target: 5'- gGCCAACAAAUGUUGGCGCCAACAAACg -3' miRNA: 3'- -CGGUUGUUUACAACCGCGGUUGUUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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