miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17316 3' -46.3 NC_004367.1 + 58582 0.66 0.999951
Target:  5'- -gAGAUGUUGGCG---GCAAugGUg- -3'
miRNA:   3'- ugUCUGCAACCGUgauUGUUugCAac -5'
17316 3' -46.3 NC_004367.1 + 133826 0.66 0.999947
Target:  5'- gGCAGAaagcggccaaggaaUGUUGcCACcAACAAACGUUGc -3'
miRNA:   3'- -UGUCU--------------GCAACcGUGaUUGUUUGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133042 0.66 0.999913
Target:  5'- aACGuuUGUUGGCGCcAACAuuUGUUGg -3'
miRNA:   3'- -UGUcuGCAACCGUGaUUGUuuGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133082 0.66 0.999913
Target:  5'- aACGuuUGUUGGCGCcAACAuuUGUUGg -3'
miRNA:   3'- -UGUcuGCAACCGUGaUUGUuuGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133122 0.66 0.999913
Target:  5'- aACGuuUGUUGGCGCcAACAuuUGUUGg -3'
miRNA:   3'- -UGUcuGCAACCGUGaUUGUuuGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133434 0.66 0.999913
Target:  5'- aACGuuUGUUGGCGCcAACAuuUGUUGg -3'
miRNA:   3'- -UGUcuGCAACCGUGaUUGUuuGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133258 0.66 0.999913
Target:  5'- aACGuuUGUUGGCGCcAACAuuUGUUGg -3'
miRNA:   3'- -UGUcuGCAACCGUGaUUGUuuGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133346 0.66 0.999913
Target:  5'- aACGuuUGUUGGCGCcAACAuuUGUUGg -3'
miRNA:   3'- -UGUcuGCAACCGUGaUUGUuuGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 19048 0.67 0.99985
Target:  5'- cAUGGGCGUggugacaagaGGCACaGACuGGACGUUGg -3'
miRNA:   3'- -UGUCUGCAa---------CCGUGaUUG-UUUGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 73532 0.68 0.999565
Target:  5'- cACAGugGgaggaUGGUACUgguauggccucugaGACAGGCGUg- -3'
miRNA:   3'- -UGUCugCa----ACCGUGA--------------UUGUUUGCAac -5'
17316 3' -46.3 NC_004367.1 + 67189 0.68 0.999478
Target:  5'- aGCGGACGUucauucaUGGgACUGGgGGAUGUUc -3'
miRNA:   3'- -UGUCUGCA-------ACCgUGAUUgUUUGCAAc -5'
17316 3' -46.3 NC_004367.1 + 113212 0.68 0.999362
Target:  5'- gACAGAUGUUGcCACUGAgGAGCu--- -3'
miRNA:   3'- -UGUCUGCAACcGUGAUUgUUUGcaac -5'
17316 3' -46.3 NC_004367.1 + 75892 0.73 0.980187
Target:  5'- uCAGugGUucgUGGUAUccGGCAGACGUUGa -3'
miRNA:   3'- uGUCugCA---ACCGUGa-UUGUUUGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 63130 0.73 0.972245
Target:  5'- uAUAGACGUUGGCcCUGauuaucaacaACGGGCGUg- -3'
miRNA:   3'- -UGUCUGCAACCGuGAU----------UGUUUGCAac -5'
17316 3' -46.3 NC_004367.1 + 22104 0.76 0.911793
Target:  5'- cCGGACGUUGGaCGCgcgGACAAAUGUc- -3'
miRNA:   3'- uGUCUGCAACC-GUGa--UUGUUUGCAac -5'
17316 3' -46.3 NC_004367.1 + 55697 0.76 0.911793
Target:  5'- cCGGACGUUGGaCGCgcgGACAAAUGUc- -3'
miRNA:   3'- uGUCUGCAACC-GUGa--UUGUUUGCAac -5'
17316 3' -46.3 NC_004367.1 + 133752 0.8 0.736477
Target:  5'- aACAaACGUUGGCACcAACAAACGUg- -3'
miRNA:   3'- -UGUcUGCAACCGUGaUUGUUUGCAac -5'
17316 3' -46.3 NC_004367.1 + 133608 0.81 0.715224
Target:  5'- aACAaAUGUUGGCGCcAACAAACGUUGc -3'
miRNA:   3'- -UGUcUGCAACCGUGaUUGUUUGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133296 0.81 0.715224
Target:  5'- aACAaAUGUUGGCGCcAACAAACGUUGc -3'
miRNA:   3'- -UGUcUGCAACCGUGaUUGUUUGCAAC- -5'
17316 3' -46.3 NC_004367.1 + 133432 0.81 0.715224
Target:  5'- aACAaAUGUUGGCGCcAACAAACGUUGc -3'
miRNA:   3'- -UGUcUGCAACCGUGaUUGUUUGCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.