Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133250 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133338 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133034 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133426 | 0.76 | 0.694908 |
Target: 5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3' miRNA: 3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133660 | 0.82 | 0.395588 |
Target: 5'- aGGGUCcucGCCAACAGAcGUUGGCACUAa -3' miRNA: 3'- -CUCAGu--CGGUUGUUUaCAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 132881 | 0.85 | 0.269244 |
Target: 5'- aAGgCGGCCAACAAAUGUgGGCACCAc -3' miRNA: 3'- cUCaGUCGGUUGUUUACAaCCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133777 | 0.86 | 0.227444 |
Target: 5'- cGAGUCAgucucauguguccucGCCAACAAAcGUUGGCACCAa -3' miRNA: 3'- -CUCAGU---------------CGGUUGUUUaCAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133618 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133530 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133306 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133266 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133226 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133442 | 0.97 | 0.048894 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133138 | 0.98 | 0.043559 |
Target: 5'- aGAGgCGGCCAACAAAUGUUGGCACCAa -3' miRNA: 3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5' |
|||||||
17317 | 5' | -49.8 | NC_004367.1 | + | 133723 | 1.1 | 0.008218 |
Target: 5'- aGAGUCAGCCAACAAAUGUUGGCACCAa -3' miRNA: 3'- -CUCAGUCGGUUGUUUACAACCGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home