miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17317 5' -49.8 NC_004367.1 + 133250 0.76 0.694908
Target:  5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3'
miRNA:   3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133338 0.76 0.694908
Target:  5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3'
miRNA:   3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133034 0.76 0.694908
Target:  5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3'
miRNA:   3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133426 0.76 0.694908
Target:  5'- -uGUUGGgCAACGuuUGUUGGCGCCAa -3'
miRNA:   3'- cuCAGUCgGUUGUuuACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133660 0.82 0.395588
Target:  5'- aGGGUCcucGCCAACAGAcGUUGGCACUAa -3'
miRNA:   3'- -CUCAGu--CGGUUGUUUaCAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 132881 0.85 0.269244
Target:  5'- aAGgCGGCCAACAAAUGUgGGCACCAc -3'
miRNA:   3'- cUCaGUCGGUUGUUUACAaCCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133777 0.86 0.227444
Target:  5'- cGAGUCAgucucauguguccucGCCAACAAAcGUUGGCACCAa -3'
miRNA:   3'- -CUCAGU---------------CGGUUGUUUaCAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133618 0.97 0.048894
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133530 0.97 0.048894
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133306 0.97 0.048894
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133266 0.97 0.048894
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133226 0.97 0.048894
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133442 0.97 0.048894
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCGCCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133138 0.98 0.043559
Target:  5'- aGAGgCGGCCAACAAAUGUUGGCACCAa -3'
miRNA:   3'- -CUCaGUCGGUUGUUUACAACCGUGGU- -5'
17317 5' -49.8 NC_004367.1 + 133723 1.1 0.008218
Target:  5'- aGAGUCAGCCAACAAAUGUUGGCACCAa -3'
miRNA:   3'- -CUCAGUCGGUUGUUUACAACCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.