miRNA display CGI


Results 41 - 60 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17324 3' -55.9 NC_004367.1 + 142197 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 141869 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 141542 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 141214 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 140886 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 145474 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 145146 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 23079 0.7 0.687582
Target:  5'- ----cAGUGGGGGGGGgGUuugGGgUUCCc -3'
miRNA:   3'- uuuuuUCACUCCCCCCgCA---CCgGAGG- -5'
17324 3' -55.9 NC_004367.1 + 149406 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 149078 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 148423 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 148750 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 148095 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 147767 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 147440 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 147112 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 146784 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 146457 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 146129 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17324 3' -55.9 NC_004367.1 + 145801 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.