Results 61 - 80 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17328 | 3' | -55.9 | NC_004367.1 | + | 146747 | 1.1 | 0.002061 |
Target: 5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 146784 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 146983 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147075 | 1.1 | 0.002061 |
Target: 5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147112 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147311 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147403 | 1.1 | 0.002061 |
Target: 5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147440 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147639 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147730 | 1.1 | 0.002061 |
Target: 5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147767 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 147966 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148058 | 1.1 | 0.002061 |
Target: 5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148095 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148294 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148386 | 1.1 | 0.002061 |
Target: 5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148423 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148622 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148713 | 0.98 | 0.015112 |
Target: 5'- gAAAAAAGUGA-GGGGGCGUGGCCUCCa -3' miRNA: 3'- -UUUUUUCACUcCCCCCGCACCGGAGG- -5' |
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17328 | 3' | -55.9 | NC_004367.1 | + | 148750 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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