miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17330 3' -55.9 NC_004367.1 + 142488 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 146420 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 145437 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 140849 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 142815 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 141832 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 143143 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 144126 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 143798 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 146092 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 144781 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 144454 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 141505 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 145764 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 141177 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 143471 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 145109 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 146747 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 147075 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17330 3' -55.9 NC_004367.1 + 149369 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.