miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17331 3' -55.9 NC_004367.1 + 149696 1.1 0.002306
Target:  5'- AAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 149605 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17331 3' -55.9 NC_004367.1 + 149406 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17331 3' -55.9 NC_004367.1 + 149369 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 149277 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17331 3' -55.9 NC_004367.1 + 149078 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17331 3' -55.9 NC_004367.1 + 149041 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 148949 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17331 3' -55.9 NC_004367.1 + 148750 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17331 3' -55.9 NC_004367.1 + 148713 0.98 0.015112
Target:  5'- gAAAAAAGUGA-GGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUcCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 148622 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17331 3' -55.9 NC_004367.1 + 148423 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17331 3' -55.9 NC_004367.1 + 148386 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 148294 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17331 3' -55.9 NC_004367.1 + 148095 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17331 3' -55.9 NC_004367.1 + 148058 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 147966 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17331 3' -55.9 NC_004367.1 + 147767 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17331 3' -55.9 NC_004367.1 + 147730 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17331 3' -55.9 NC_004367.1 + 147639 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.