Results 41 - 60 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17331 | 3' | -55.9 | NC_004367.1 | + | 148294 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 148622 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 148949 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 149277 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 149605 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 145345 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 145017 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 108235 | 0.75 | 0.419563 |
Target: 5'- gGGGAGGGUGuguGGGGGGCuUGGCCa-- -3' miRNA: 3'- -UUUUUUCACu--CCCCCCGcACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 140757 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 141085 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 141413 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 141740 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 142068 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 142396 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 143051 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 143379 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 143707 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 144034 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 144362 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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17331 | 3' | -55.9 | NC_004367.1 | + | 144690 | 0.75 | 0.419563 |
Target: 5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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