Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17332 | 3' | -55.9 | NC_004367.1 | + | 140886 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 146784 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 146457 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 146129 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 145801 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 145474 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 145146 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 144818 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 144491 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 143835 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 144163 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 143508 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 143180 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 142852 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 142525 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 142197 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 141869 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 141542 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 141214 | 0.69 | 0.737968 |
Target: 5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3' miRNA: 3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' |
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17332 | 3' | -55.9 | NC_004367.1 | + | 142723 | 0.69 | 0.737968 |
Target: 5'- --uGGAGcGGGGGuGGCGUGGCCg-- -3' miRNA: 3'- uuuUUUCaCUCCCcCCGCACCGGagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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