miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17332 5' -64.2 NC_004367.1 + 19387 0.66 0.528755
Target:  5'- cAGGAuaucaAGGUGUaUCCaCUGGgGUGCUGCc -3'
miRNA:   3'- -UCCU-----UCCGCAgGGG-GGCCgCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 26355 0.66 0.513883
Target:  5'- cGGAauauacGGGCuUCCUCCauauccggcggcagaUGGCGCaGCUGCa -3'
miRNA:   3'- uCCU------UCCGcAGGGGG---------------GCCGCG-CGACG- -5'
17332 5' -64.2 NC_004367.1 + 35796 0.67 0.473926
Target:  5'- uGGAAGGUGaaccgCCCCuuGGUGgaaGCgUGCu -3'
miRNA:   3'- uCCUUCCGCa----GGGGggCCGCg--CG-ACG- -5'
17332 5' -64.2 NC_004367.1 + 14812 0.67 0.473035
Target:  5'- uGGGAacAGGcCGUgugCCaCCCCGGUaaaaccguagacuGCGUUGCa -3'
miRNA:   3'- -UCCU--UCC-GCA---GG-GGGGCCG-------------CGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 146713 0.99 0.002962
Target:  5'- gAGGAAGGCGU-CCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAgGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 145730 1.07 0.000773
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGUc -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 141471 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 141798 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 142126 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 142454 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 142781 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 143109 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 143437 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 143764 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 144092 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 144420 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 144747 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 141143 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 145403 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5'
17332 5' -64.2 NC_004367.1 + 146058 1.1 0.000456
Target:  5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3'
miRNA:   3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.