Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17332 | 5' | -64.2 | NC_004367.1 | + | 19387 | 0.66 | 0.528755 |
Target: 5'- cAGGAuaucaAGGUGUaUCCaCUGGgGUGCUGCc -3' miRNA: 3'- -UCCU-----UCCGCAgGGG-GGCCgCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 26355 | 0.66 | 0.513883 |
Target: 5'- cGGAauauacGGGCuUCCUCCauauccggcggcagaUGGCGCaGCUGCa -3' miRNA: 3'- uCCU------UCCGcAGGGGG---------------GCCGCG-CGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 35796 | 0.67 | 0.473926 |
Target: 5'- uGGAAGGUGaaccgCCCCuuGGUGgaaGCgUGCu -3' miRNA: 3'- uCCUUCCGCa----GGGGggCCGCg--CG-ACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 14812 | 0.67 | 0.473035 |
Target: 5'- uGGGAacAGGcCGUgugCCaCCCCGGUaaaaccguagacuGCGUUGCa -3' miRNA: 3'- -UCCU--UCC-GCA---GG-GGGGCCG-------------CGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 146713 | 0.99 | 0.002962 |
Target: 5'- gAGGAAGGCGU-CCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAgGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 145730 | 1.07 | 0.000773 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGUc -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 141471 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 141798 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 142126 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 142454 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 142781 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 143109 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 143437 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 143764 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 144092 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 144420 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 144747 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 141143 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 145403 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 146058 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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