Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17332 | 5' | -64.2 | NC_004367.1 | + | 146058 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 146386 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 146713 | 0.99 | 0.002962 |
Target: 5'- gAGGAAGGCGU-CCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAgGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 147041 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 147369 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 147697 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 148024 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 148352 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 148680 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 149007 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 149335 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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17332 | 5' | -64.2 | NC_004367.1 | + | 149663 | 1.1 | 0.000456 |
Target: 5'- gAGGAAGGCGUCCCCCCGGCGCGCUGCu -3' miRNA: 3'- -UCCUUCCGCAGGGGGGCCGCGCGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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