miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17335 3' -55.9 NC_004367.1 + 23079 0.7 0.687582
Target:  5'- ----cAGUGGGGGGGGgGUuugGGgUUCCc -3'
miRNA:   3'- uuuuuUCACUCCCCCCgCA---CCgGAGG- -5'
17335 3' -55.9 NC_004367.1 + 56441 0.7 0.687582
Target:  5'- ----cAGUGGGGGGGGgGUuugGGgUUCCc -3'
miRNA:   3'- uuuuuUCACUCCCCCCgCA---CCgGAGG- -5'
17335 3' -55.9 NC_004367.1 + 108235 0.75 0.419563
Target:  5'- gGGGAGGGUGuguGGGGGGCuUGGCCa-- -3'
miRNA:   3'- -UUUUUUCACu--CCCCCCGcACCGGagg -5'
17335 3' -55.9 NC_004367.1 + 116136 0.7 0.687582
Target:  5'- ----cAGUGGGGGGGGgGUuugGGgUUCCc -3'
miRNA:   3'- uuuuuUCACUCCCCCCgCA---CCgGAGG- -5'
17335 3' -55.9 NC_004367.1 + 140559 0.74 0.47486
Target:  5'- --uGGGGUGGGGGGGGgGUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17335 3' -55.9 NC_004367.1 + 140757 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17335 3' -55.9 NC_004367.1 + 140849 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17335 3' -55.9 NC_004367.1 + 140886 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17335 3' -55.9 NC_004367.1 + 141085 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17335 3' -55.9 NC_004367.1 + 141177 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17335 3' -55.9 NC_004367.1 + 141214 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17335 3' -55.9 NC_004367.1 + 141413 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17335 3' -55.9 NC_004367.1 + 141505 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17335 3' -55.9 NC_004367.1 + 141542 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17335 3' -55.9 NC_004367.1 + 141740 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17335 3' -55.9 NC_004367.1 + 141832 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17335 3' -55.9 NC_004367.1 + 141869 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5'
17335 3' -55.9 NC_004367.1 + 142068 0.75 0.419563
Target:  5'- --uGGAGcGGGGGuGGGCGUGGCCg-- -3'
miRNA:   3'- uuuUUUCaCUCCC-CCCGCACCGGagg -5'
17335 3' -55.9 NC_004367.1 + 142160 1.1 0.002061
Target:  5'- gAAAAAAGUGAGGGGGGCGUGGCCUCCa -3'
miRNA:   3'- -UUUUUUCACUCCCCCCGCACCGGAGG- -5'
17335 3' -55.9 NC_004367.1 + 142197 0.69 0.737968
Target:  5'- --uGGGGUGGGGGGGG-GUGcCCUUg -3'
miRNA:   3'- uuuUUUCACUCCCCCCgCACcGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.