Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 4570 | 0.69 | 0.988421 |
Target: 5'- -------gUCCAgCGCCCGAAGACa- -3' miRNA: 3'- ccuuacaaAGGUgGCGGGCUUUUGca -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 9539 | 1.11 | 0.011538 |
Target: 5'- uGGAAUGUUUCCACCGCCCGAAAACGUg -3' miRNA: 3'- -CCUUACAAAGGUGGCGGGCUUUUGCA- -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 103193 | 0.69 | 0.989846 |
Target: 5'- cGGAUGa--CCACCGCCCuGgcAGCGg -3' miRNA: 3'- cCUUACaaaGGUGGCGGG-CuuUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 121065 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 121096 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 123974 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 124005 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 126883 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 126914 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 129792 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 129823 | 0.66 | 0.998984 |
Target: 5'- aGGGGg---UCCAgCCccugGCCCGGAGGCGg -3' miRNA: 3'- -CCUUacaaAGGU-GG----CGGGCUUUUGCa -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 133811 | 0.66 | 0.999327 |
Target: 5'- aGGAAUGUUgCCACCaacaaacguuGCCC-AAAACc- -3' miRNA: 3'- -CCUUACAAaGGUGG----------CGGGcUUUUGca -5' |
|||||||
17347 | 3' | -48.8 | NC_004367.1 | + | 147716 | 0.73 | 0.934248 |
Target: 5'- gGGcGUGgccUCCACCGCCgagGAAGGCGUc -3' miRNA: 3'- -CCuUACaa-AGGUGGCGGg--CUUUUGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home