Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17349 | 3' | -49.2 | NC_004367.1 | + | 58948 | 0.66 | 0.997363 |
Target: 5'- aAUCCUGUGUCUugaugAUCCAGaUUGGUg- -3' miRNA: 3'- cUGGGAUACAGG-----UGGGUUaAACCAau -5' |
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17349 | 3' | -49.2 | NC_004367.1 | + | 55508 | 0.67 | 0.992744 |
Target: 5'- gGACCCUAUG-CCacaacucaccugcaGCCCAcuugGGUUAg -3' miRNA: 3'- -CUGGGAUACaGG--------------UGGGUuaaaCCAAU- -5' |
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17349 | 3' | -49.2 | NC_004367.1 | + | 33865 | 0.67 | 0.991971 |
Target: 5'- cGGCUCUAUGUUCACCaauugaaaUUGGUUu -3' miRNA: 3'- -CUGGGAUACAGGUGGguua----AACCAAu -5' |
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17349 | 3' | -49.2 | NC_004367.1 | + | 51649 | 0.71 | 0.940902 |
Target: 5'- uGACUCUAUGUCCGCCUc---UGGg-- -3' miRNA: 3'- -CUGGGAUACAGGUGGGuuaaACCaau -5' |
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17349 | 3' | -49.2 | NC_004367.1 | + | 15696 | 1.07 | 0.014294 |
Target: 5'- uGACCCUAUGUCCACCCAAUUUGGUUAu -3' miRNA: 3'- -CUGGGAUACAGGUGGGUUAAACCAAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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