miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17349 5' -51.9 NC_004367.1 + 112896 0.66 0.986522
Target:  5'- aGCCAACacuuuuauaUGCAUuuauCCUGGCcGGGCAUUUu -3'
miRNA:   3'- -CGGUUG---------AUGUGu---GGGUCG-CCUGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 29801 0.66 0.984587
Target:  5'- gGCCAugcgGCUcauuugaGC-CGCCCGGCGGAUc--- -3'
miRNA:   3'- -CGGU----UGA-------UGuGUGGGUCGCCUGuaag -5'
17349 5' -51.9 NC_004367.1 + 96892 0.67 0.975997
Target:  5'- cGCCAugGCcACACACCCaacgAGUGGaACAa-- -3'
miRNA:   3'- -CGGU--UGaUGUGUGGG----UCGCC-UGUaag -5'
17349 5' -51.9 NC_004367.1 + 74688 0.67 0.975997
Target:  5'- aGCCAca---GCACCCGGCucaGGACAUg- -3'
miRNA:   3'- -CGGUugaugUGUGGGUCG---CCUGUAag -5'
17349 5' -51.9 NC_004367.1 + 88449 0.67 0.97043
Target:  5'- uGCCcACUACGaACCagaAGCGGuACAUUg -3'
miRNA:   3'- -CGGuUGAUGUgUGGg--UCGCC-UGUAAg -5'
17349 5' -51.9 NC_004367.1 + 19571 0.67 0.97043
Target:  5'- -aCGGCaGCAC-CCCAGUGGAUAc-- -3'
miRNA:   3'- cgGUUGaUGUGuGGGUCGCCUGUaag -5'
17349 5' -51.9 NC_004367.1 + 26752 0.67 0.967325
Target:  5'- uCCAACcuggACAacCGCCCcGCGGACAg-- -3'
miRNA:   3'- cGGUUGa---UGU--GUGGGuCGCCUGUaag -5'
17349 5' -51.9 NC_004367.1 + 22699 0.67 0.963995
Target:  5'- gGUCAACcgggggACACGuCCCcgucccGCGGACAUUUg -3'
miRNA:   3'- -CGGUUGa-----UGUGU-GGGu-----CGCCUGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 56270 0.67 0.963995
Target:  5'- gGUCAACcgggggACACGuCCCcgucccGCGGACAUUUg -3'
miRNA:   3'- -CGGUUGa-----UGUGU-GGGu-----CGCCUGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 22537 0.68 0.958186
Target:  5'- uGUCAucAUUACACAUUCAGagcacacucaucccuCGGGCAUUCa -3'
miRNA:   3'- -CGGU--UGAUGUGUGGGUC---------------GCCUGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 56108 0.68 0.958186
Target:  5'- uGUCAucAUUACACAUUCAGagcacacucaucccuCGGGCAUUCa -3'
miRNA:   3'- -CGGU--UGAUGUGUGGGUC---------------GCCUGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 68386 0.68 0.956246
Target:  5'- cGCCAgcaaguaACUAUuUACCCAGaugaGGACAUg- -3'
miRNA:   3'- -CGGU-------UGAUGuGUGGGUCg---CCUGUAag -5'
17349 5' -51.9 NC_004367.1 + 112343 0.68 0.94832
Target:  5'- -aCAACUgACACGCaagaaUGGCGGACGUUa -3'
miRNA:   3'- cgGUUGA-UGUGUGg----GUCGCCUGUAAg -5'
17349 5' -51.9 NC_004367.1 + 74242 0.68 0.94379
Target:  5'- aGCCAAC-ACAacacuugucagcCACCUAGUGGcCAUUUa -3'
miRNA:   3'- -CGGUUGaUGU------------GUGGGUCGCCuGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 114680 0.68 0.94379
Target:  5'- uCC-GCU-CACAUCCAGCGGAag-UCa -3'
miRNA:   3'- cGGuUGAuGUGUGGGUCGCCUguaAG- -5'
17349 5' -51.9 NC_004367.1 + 38220 0.68 0.94379
Target:  5'- uCCAACaaaccUAUACACCCAGacaCGGGCAg-- -3'
miRNA:   3'- cGGUUG-----AUGUGUGGGUC---GCCUGUaag -5'
17349 5' -51.9 NC_004367.1 + 104114 0.68 0.942382
Target:  5'- aGCCAcuuaACUAUAUACCCAuuuuuuauaauuuuGUGGaAUAUUCa -3'
miRNA:   3'- -CGGU----UGAUGUGUGGGU--------------CGCC-UGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 105606 0.68 0.939007
Target:  5'- cCCAAUUugGCACCCcaauucuggAGgGGGCAUa- -3'
miRNA:   3'- cGGUUGAugUGUGGG---------UCgCCUGUAag -5'
17349 5' -51.9 NC_004367.1 + 34449 0.69 0.92868
Target:  5'- cCCAGgUGgaGgACCguGCGGACAUUCa -3'
miRNA:   3'- cGGUUgAUg-UgUGGguCGCCUGUAAG- -5'
17349 5' -51.9 NC_004367.1 + 141946 0.69 0.923133
Target:  5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3'
miRNA:   3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.