Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17349 | 5' | -51.9 | NC_004367.1 | + | 144895 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 146534 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 146861 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 147189 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 147517 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 147844 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 148172 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 144240 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 143912 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 148827 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 149155 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 140963 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 141291 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 141619 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 141946 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 142274 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 142602 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 142929 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 143257 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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17349 | 5' | -51.9 | NC_004367.1 | + | 143585 | 0.69 | 0.923133 |
Target: 5'- cGCgAGCaGCGCGCCgGGgGGACGccUUCc -3' miRNA: 3'- -CGgUUGaUGUGUGGgUCgCCUGU--AAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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