miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17350 3' -49.5 NC_004367.1 + 89322 0.66 0.997553
Target:  5'- ---aCAGGcCAACCggGGCCAAAaGCc -3'
miRNA:   3'- uguaGUCU-GUUGGuaCCGGUUUaCGc -5'
17350 3' -49.5 NC_004367.1 + 63075 0.66 0.997086
Target:  5'- aGCA--GGACcGCCAUGGCCAAcaaCGg -3'
miRNA:   3'- -UGUagUCUGuUGGUACCGGUUuacGC- -5'
17350 3' -49.5 NC_004367.1 + 109018 0.66 0.995931
Target:  5'- cGCG-CAGACAGCCAacGGCCcguAAGcGCGu -3'
miRNA:   3'- -UGUaGUCUGUUGGUa-CCGG---UUUaCGC- -5'
17350 3' -49.5 NC_004367.1 + 93886 0.66 0.994997
Target:  5'- uAUAUCGGAUAggugagggcacauaGCCuucAUGGCCAAAcGCa -3'
miRNA:   3'- -UGUAGUCUGU--------------UGG---UACCGGUUUaCGc -5'
17350 3' -49.5 NC_004367.1 + 56054 0.67 0.99352
Target:  5'- uACG-CGGACAACCAcccucaguacgUGGgCAAAUGUc -3'
miRNA:   3'- -UGUaGUCUGUUGGU-----------ACCgGUUUACGc -5'
17350 3' -49.5 NC_004367.1 + 22483 0.67 0.99352
Target:  5'- uACG-CGGACAACCAcccucaguacgUGGgCAAAUGUc -3'
miRNA:   3'- -UGUaGUCUGUUGGU-----------ACCgGUUUACGc -5'
17350 3' -49.5 NC_004367.1 + 108493 0.67 0.99352
Target:  5'- gGCA-CAGGCAGCaaacaAUGGCgAGA-GCGg -3'
miRNA:   3'- -UGUaGUCUGUUGg----UACCGgUUUaCGC- -5'
17350 3' -49.5 NC_004367.1 + 103035 0.67 0.9925
Target:  5'- --uUCAGAC-ACUGUGGCCAcacAcgGCa -3'
miRNA:   3'- uguAGUCUGuUGGUACCGGU---UuaCGc -5'
17350 3' -49.5 NC_004367.1 + 25743 0.68 0.988658
Target:  5'- aACAUaaagCGGACAGCUugGGCCAcAAUGCu -3'
miRNA:   3'- -UGUA----GUCUGUUGGuaCCGGU-UUACGc -5'
17350 3' -49.5 NC_004367.1 + 61284 0.68 0.987083
Target:  5'- aACGUUAGGCAuCCuguucuagGGCCAGAuuuUGCa -3'
miRNA:   3'- -UGUAGUCUGUuGGua------CCGGUUU---ACGc -5'
17350 3' -49.5 NC_004367.1 + 135779 0.68 0.985163
Target:  5'- gACAUCAuGGCcggauucAACCAU-GCCGAGUGCc -3'
miRNA:   3'- -UGUAGU-CUG-------UUGGUAcCGGUUUACGc -5'
17350 3' -49.5 NC_004367.1 + 101197 0.68 0.981343
Target:  5'- aGCAUCAGugGucuuCCAUGGuCCAugucacGCGu -3'
miRNA:   3'- -UGUAGUCugUu---GGUACC-GGUuua---CGC- -5'
17350 3' -49.5 NC_004367.1 + 81832 0.69 0.973877
Target:  5'- --cUUAGugAgGCCAUGGCCgGAAUGCu -3'
miRNA:   3'- uguAGUCugU-UGGUACCGG-UUUACGc -5'
17350 3' -49.5 NC_004367.1 + 87021 0.69 0.967823
Target:  5'- cCGUCGGAUAagGCCAUGGU--GGUGCu -3'
miRNA:   3'- uGUAGUCUGU--UGGUACCGguUUACGc -5'
17350 3' -49.5 NC_004367.1 + 93094 0.7 0.960835
Target:  5'- cCGUCAGAC-ACCGUGGCag---GCa -3'
miRNA:   3'- uGUAGUCUGuUGGUACCGguuuaCGc -5'
17350 3' -49.5 NC_004367.1 + 48623 0.71 0.943866
Target:  5'- --uUUAGcucGCAGCCAUGGCCAccgGCGu -3'
miRNA:   3'- uguAGUC---UGUUGGUACCGGUuuaCGC- -5'
17350 3' -49.5 NC_004367.1 + 126806 0.71 0.938974
Target:  5'- gACAcUUAGACAGCCcucuaGUGGCCAacuaGAUGuCGg -3'
miRNA:   3'- -UGU-AGUCUGUUGG-----UACCGGU----UUAC-GC- -5'
17350 3' -49.5 NC_004367.1 + 123897 0.71 0.938974
Target:  5'- gACAcUUAGACAGCCcucuaGUGGCCAacuaGAUGuCGg -3'
miRNA:   3'- -UGU-AGUCUGUUGG-----UACCGGU----UUAC-GC- -5'
17350 3' -49.5 NC_004367.1 + 120988 0.71 0.938974
Target:  5'- gACAcUUAGACAGCCcucuaGUGGCCAacuaGAUGuCGg -3'
miRNA:   3'- -UGU-AGUCUGUUGG-----UACCGGU----UUAC-GC- -5'
17350 3' -49.5 NC_004367.1 + 43049 0.73 0.882987
Target:  5'- cCAUCAGA--GCCA-GGCCGAGUGUc -3'
miRNA:   3'- uGUAGUCUguUGGUaCCGGUUUACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.