miRNA: 3'- -CUGCGUAGA-CuGAUGCGAacaGACUG- -5'
miRNA: 3'- cugCGUAGAC-UGAUGCGaac--AGACUG- -5'
miRNA: 3'- cuGCGUAGACUGaUGCgAACAGACUG- -5'
miRNA: 3'- -CUGCGUAGACUGAUGCGAACAGACUG- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 17350 | 5' | -50.7 | NC_004367.1 | + | 32968 | 0.68 | 0.964592 |
|
Target: 5'- gGACGCAUCUaGcCUACGUUgcaCUGGCc -3' miRNA: 3'- -CUGCGUAGA-CuGAUGCGAacaGACUG- -5' |
|||||||
| 17350 | 5' | -50.7 | NC_004367.1 | + | 53930 | 0.71 | 0.911442 |
|
Target: 5'- --aGCAUCUGaACUGCGCagaaaUCUGGCa -3' miRNA: 3'- cugCGUAGAC-UGAUGCGaac--AGACUG- -5' |
|||||||
| 17350 | 5' | -50.7 | NC_004367.1 | + | 16232 | 0.72 | 0.861452 |
|
Target: 5'- -uCGCAUUUGGCcAUGgUUGUCUGAUg -3' miRNA: 3'- cuGCGUAGACUGaUGCgAACAGACUG- -5' |
|||||||
| 17350 | 5' | -50.7 | NC_004367.1 | + | 16093 | 1.11 | 0.006306 |
|
Target: 5'- gGACGCAUCUGACUACGCUUGUCUGACa -3' miRNA: 3'- -CUGCGUAGACUGAUGCGAACAGACUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home