miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17351 5' -43.6 NC_004367.1 + 70047 0.66 1
Target:  5'- gGCAgAGGAGGCAgggGUgGAAGAGgcgGUa -3'
miRNA:   3'- -UGUgUUCUUUGUa--CG-CUUCUCaaaCG- -5'
17351 5' -43.6 NC_004367.1 + 22171 0.67 0.999999
Target:  5'- -gGCGGGGGACGUGUaacuAGuGUUUGUg -3'
miRNA:   3'- ugUGUUCUUUGUACGcu--UCuCAAACG- -5'
17351 5' -43.6 NC_004367.1 + 55764 0.67 0.999999
Target:  5'- -gGCGGGGGACGUGUaacuAGuGUUUGUg -3'
miRNA:   3'- ugUGUUCUUUGUACGcu--UCuCAAACG- -5'
17351 5' -43.6 NC_004367.1 + 66183 0.66 0.999999
Target:  5'- cACACAAGAGuCGUGUcaggcccugggcgguGAAGGGggUGa -3'
miRNA:   3'- -UGUGUUCUUuGUACG---------------CUUCUCaaACg -5'
17351 5' -43.6 NC_004367.1 + 34249 0.68 0.999988
Target:  5'- gGCGCAGGGAGCGauccgGuCGuucAGAGUUcaUGCg -3'
miRNA:   3'- -UGUGUUCUUUGUa----C-GCu--UCUCAA--ACG- -5'
17351 5' -43.6 NC_004367.1 + 69805 0.68 0.999988
Target:  5'- cCACAAGGAACAUcucaGggGAGUaccagGCc -3'
miRNA:   3'- uGUGUUCUUUGUAcg--CuuCUCAaa---CG- -5'
17351 5' -43.6 NC_004367.1 + 40441 0.68 0.999983
Target:  5'- -uGCAGGAAAUG-GCGguGcAGUUUGCg -3'
miRNA:   3'- ugUGUUCUUUGUaCGCuuC-UCAAACG- -5'
17351 5' -43.6 NC_004367.1 + 83954 0.69 0.999955
Target:  5'- gAUGCAGuGAGCGUGcCGGAGAG-UUGUa -3'
miRNA:   3'- -UGUGUUcUUUGUAC-GCUUCUCaAACG- -5'
17351 5' -43.6 NC_004367.1 + 46441 0.69 0.999918
Target:  5'- cGCACAuuaaGGAAcuGCAUGCGAuuGGUcaGCg -3'
miRNA:   3'- -UGUGU----UCUU--UGUACGCUucUCAaaCG- -5'
17351 5' -43.6 NC_004367.1 + 23180 0.7 0.999813
Target:  5'- -aACGGGAGGa--GgGAGGGGUUUGCa -3'
miRNA:   3'- ugUGUUCUUUguaCgCUUCUCAAACG- -5'
17351 5' -43.6 NC_004367.1 + 56542 0.7 0.999813
Target:  5'- -aACGGGAGGa--GgGAGGGGUUUGCa -3'
miRNA:   3'- ugUGUUCUUUguaCgCUUCUCAAACG- -5'
17351 5' -43.6 NC_004367.1 + 116237 0.7 0.999813
Target:  5'- -aACGGGAGGa--GgGAGGGGUUUGCa -3'
miRNA:   3'- ugUGUUCUUUguaCgCUUCUCAAACG- -5'
17351 5' -43.6 NC_004367.1 + 599 0.72 0.999018
Target:  5'- aGCACuGAGAugcaaugcaAugGUGCGGAGAGUUUa- -3'
miRNA:   3'- -UGUG-UUCU---------UugUACGCUUCUCAAAcg -5'
17351 5' -43.6 NC_004367.1 + 16723 0.72 0.999018
Target:  5'- uCAauAGAAACAUGCGAGG-GcUUGCu -3'
miRNA:   3'- uGUguUCUUUGUACGCUUCuCaAACG- -5'
17351 5' -43.6 NC_004367.1 + 16579 1.15 0.02032
Target:  5'- aACACAAGAAACAUGCGAAGAGUUUGCa -3'
miRNA:   3'- -UGUGUUCUUUGUACGCUUCUCAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.