Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17352 | 3' | -42.5 | NC_004367.1 | + | 18513 | 0.69 | 0.999991 |
Target: 5'- cCAUCACuUACAGAAUgcGGCGa--GCu -3' miRNA: 3'- -GUAGUGuAUGUUUUAaaCCGUgugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 107424 | 0.7 | 0.999987 |
Target: 5'- uGUCACAagcauccggUACAGAcggUGGCGCGgGUg -3' miRNA: 3'- gUAGUGU---------AUGUUUuaaACCGUGUgCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 96698 | 0.7 | 0.999965 |
Target: 5'- cUAUCAUcUGCAccccaaGGCGCACGCc -3' miRNA: 3'- -GUAGUGuAUGUuuuaaaCCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 34901 | 0.71 | 0.999952 |
Target: 5'- uCAUCAgGUGCAGAGUUcacaacuaUGGCucguuucCugGCg -3' miRNA: 3'- -GUAGUgUAUGUUUUAA--------ACCGu------GugCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 98842 | 0.72 | 0.999803 |
Target: 5'- aAUCAaAUcCAAAGUUUGGCcgAUACGCg -3' miRNA: 3'- gUAGUgUAuGUUUUAAACCG--UGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 14016 | 0.73 | 0.999332 |
Target: 5'- ---gAUAUGCGuauUUUGGUGCACGCg -3' miRNA: 3'- guagUGUAUGUuuuAAACCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 78895 | 0.75 | 0.997236 |
Target: 5'- gGUCGCuaaaaauguUGCAAAAUggucUGGCACGCGg -3' miRNA: 3'- gUAGUGu--------AUGUUUUAa---ACCGUGUGCg -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 80646 | 0.75 | 0.997236 |
Target: 5'- uCAUC-CGUGCGAuggaucacaAGUUUGGCAUcCGCa -3' miRNA: 3'- -GUAGuGUAUGUU---------UUAAACCGUGuGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 79544 | 0.76 | 0.993583 |
Target: 5'- uGUCACAUugAGuuUUgGGuCACACGCc -3' miRNA: 3'- gUAGUGUAugUUuuAAaCC-GUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 17998 | 0.77 | 0.988467 |
Target: 5'- aCAUCACAuUGCAGAuuaUGcGCAUGCGCg -3' miRNA: 3'- -GUAGUGU-AUGUUUuaaAC-CGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 46845 | 0.77 | 0.986793 |
Target: 5'- cCAUCACAUACAugauAGGUUUGGCAucccuCACa- -3' miRNA: 3'- -GUAGUGUAUGU----UUUAAACCGU-----GUGcg -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 26076 | 0.77 | 0.986793 |
Target: 5'- aAUCACGUaguauggaugACAAGAg--GGUACGCGCu -3' miRNA: 3'- gUAGUGUA----------UGUUUUaaaCCGUGUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 62500 | 0.8 | 0.944331 |
Target: 5'- ---gACAUACAGAGUUcuacgcaUGGCugGCGCa -3' miRNA: 3'- guagUGUAUGUUUUAA-------ACCGugUGCG- -5' |
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17352 | 3' | -42.5 | NC_004367.1 | + | 17785 | 1.16 | 0.023974 |
Target: 5'- aCAUCACAUACAAAAUUUGGCACACGCg -3' miRNA: 3'- -GUAGUGUAUGUUUUAAACCGUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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