miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
17353	3'	-55	NC_004367.1	+	120854	0.66	0.919008
	Target:  5'- -aGCCCAUUaAGUGCGGGGUCAUAg-- -3' miRNA:   3'- gcCGGGUGG-UUACGUUCCGGUAUgac -5'
17353	3'	-55	NC_004367.1	+	129582	0.66	0.919008
	Target:  5'- -aGCCCAUUaAGUGCGGGGUCAUAg-- -3' miRNA:   3'- gcCGGGUGG-UUACGUUCCGGUAUgac -5'
17353	3'	-55	NC_004367.1	+	42762	0.67	0.879986
	Target:  5'- cCGGCCCguGCCAuUGaaagaauGGGUgAUACUGa -3' miRNA:   3'- -GCCGGG--UGGUuACgu-----UCCGgUAUGAC- -5'
17353	3'	-55	NC_004367.1	+	73687	0.67	0.862794
	Target:  5'- aGGCCCggaaACCAcuggaguauguuuugGCAauucGGGCCAUGCUa -3' miRNA:   3'- gCCGGG----UGGUua-------------CGU----UCCGGUAUGAc -5'
17353	3'	-55	NC_004367.1	+	72156	0.68	0.8242
	Target:  5'- aGG-CCAUCAAaguacUGCAGGGCCcagGCUGc -3' miRNA:   3'- gCCgGGUGGUU-----ACGUUCCGGua-UGAC- -5'
17353	3'	-55	NC_004367.1	+	110826	0.68	0.822463
	Target:  5'- aGGCCCGCCccaacccUGauaacuccuaaaGAGGCCGUGCUc -3' miRNA:   3'- gCCGGGUGGuu-----ACg-----------UUCCGGUAUGAc -5'
17353	3'	-55	NC_004367.1	+	1468	0.69	0.769247
	Target:  5'- uGGCCCACCAGUcaauggGCAAcuccuuGGCCAgcacGCUc -3' miRNA:   3'- gCCGGGUGGUUA------CGUU------CCGGUa---UGAc -5'
17353	3'	-55	NC_004367.1	+	19334	0.7	0.759589
	Target:  5'- uGGCCUugCAuUGguGGGCCGUuaaUGa -3' miRNA:   3'- gCCGGGugGUuACguUCCGGUAug-AC- -5'
17353	3'	-55	NC_004367.1	+	46763	0.71	0.678924
	Target:  5'- gGGCCCagaucugaaGCCGGuUGUAAGGCCAUGg-- -3' miRNA:   3'- gCCGGG---------UGGUU-ACGUUCCGGUAUgac -5'
17353	3'	-55	NC_004367.1	+	19164	1.1	0.002625
	Target:  5'- aCGGCCCACCAAUGCAAGGCCAUACUGg -3' miRNA:   3'- -GCCGGGUGGUUACGUUCCGGUAUGAC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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