Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 12767 | 0.66 | 0.776922 |
Target: 5'- cAUGgggaCGUGGGGCGGGGAaugugGUCc -3' miRNA: 3'- -UACag--GCGCCCUGCCCCUguugaCAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 115650 | 0.68 | 0.690084 |
Target: 5'- -cGUCCuGC-GGACuGaGGGCAGCUGUCc -3' miRNA: 3'- uaCAGG-CGcCCUGcC-CCUGUUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 55881 | 0.71 | 0.510448 |
Target: 5'- ---nCCGCGGG-CGGGGACG--UGUCc -3' miRNA: 3'- uacaGGCGCCCuGCCCCUGUugACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 22288 | 0.71 | 0.500876 |
Target: 5'- ---nCCGCGGGACGGGGACu------ -3' miRNA: 3'- uacaGGCGCCCUGCCCCUGuugacag -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 22246 | 0.71 | 0.500876 |
Target: 5'- ---nCCGCGGGACGGGGACu------ -3' miRNA: 3'- uacaGGCGCCCUGCCCCUGuugacag -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 26575 | 0.71 | 0.481975 |
Target: 5'- cUGUCCGCGGGGCGGuuguccagguuGGACuGCaacagaGUCa -3' miRNA: 3'- uACAGGCGCCCUGCC-----------CCUGuUGa-----CAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 115438 | 0.72 | 0.454292 |
Target: 5'- aAUGUCCGCGacAUGGGGACGAgUGg- -3' miRNA: 3'- -UACAGGCGCccUGCCCCUGUUgACag -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 115572 | 0.78 | 0.191943 |
Target: 5'- uUGUCCGCGaGACGGGGACG--UGUCc -3' miRNA: 3'- uACAGGCGCcCUGCCCCUGUugACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 55860 | 0.83 | 0.101656 |
Target: 5'- ---nCCGCGGGACGGGuACAACUGUCc -3' miRNA: 3'- uacaGGCGCCCUGCCCcUGUUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 115489 | 0.85 | 0.066727 |
Target: 5'- -aGUCCGCaGGACGGGGACAGUUGUCc -3' miRNA: 3'- uaCAGGCGcCCUGCCCCUGUUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 22306 | 0.9 | 0.031481 |
Target: 5'- cUGUCCGCGGGACGGGGACG--UGUCc -3' miRNA: 3'- uACAGGCGCCCUGCCCCUGUugACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 56085 | 0.91 | 0.026044 |
Target: 5'- aAUGUCCGCGGGACGGGGACG--UGUCc -3' miRNA: 3'- -UACAGGCGCCCUGCCCCUGUugACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 22514 | 0.91 | 0.026044 |
Target: 5'- aAUGUCCGCGGGACGGGGACG--UGUCc -3' miRNA: 3'- -UACAGGCGCCCUGCCCCUGUugACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 55839 | 0.94 | 0.016402 |
Target: 5'- ---nCCGCGGGACGGGGACAACUGUCc -3' miRNA: 3'- uacaGGCGCCCUGCCCCUGUUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 115530 | 0.96 | 0.012149 |
Target: 5'- uUGUCCGCGGGACGGGGACAGUUGUCc -3' miRNA: 3'- uACAGGCGCCCUGCCCCUGUUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 22264 | 0.98 | 0.008993 |
Target: 5'- cUGUCCGCGGGACGGGGACuACUGUCc -3' miRNA: 3'- uACAGGCGCCCUGCCCCUGuUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 55814 | 1.06 | 0.002347 |
Target: 5'- gAUGUCCGCGGGACGGGGACAACUGUCc -3' miRNA: 3'- -UACAGGCGCCCUGCCCCUGUUGACAG- -5' |
|||||||
17354 | 3' | -58.6 | NC_004367.1 | + | 22221 | 1.06 | 0.002347 |
Target: 5'- gAUGUCCGCGGGACGGGGACAACUGUCc -3' miRNA: 3'- -UACAGGCGCCCUGCCCCUGUUGACAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home