miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17354 3' -58.6 NC_004367.1 + 12767 0.66 0.776922
Target:  5'- cAUGgggaCGUGGGGCGGGGAaugugGUCc -3'
miRNA:   3'- -UACag--GCGCCCUGCCCCUguugaCAG- -5'
17354 3' -58.6 NC_004367.1 + 115650 0.68 0.690084
Target:  5'- -cGUCCuGC-GGACuGaGGGCAGCUGUCc -3'
miRNA:   3'- uaCAGG-CGcCCUGcC-CCUGUUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 55881 0.71 0.510448
Target:  5'- ---nCCGCGGG-CGGGGACG--UGUCc -3'
miRNA:   3'- uacaGGCGCCCuGCCCCUGUugACAG- -5'
17354 3' -58.6 NC_004367.1 + 22288 0.71 0.500876
Target:  5'- ---nCCGCGGGACGGGGACu------ -3'
miRNA:   3'- uacaGGCGCCCUGCCCCUGuugacag -5'
17354 3' -58.6 NC_004367.1 + 22246 0.71 0.500876
Target:  5'- ---nCCGCGGGACGGGGACu------ -3'
miRNA:   3'- uacaGGCGCCCUGCCCCUGuugacag -5'
17354 3' -58.6 NC_004367.1 + 26575 0.71 0.481975
Target:  5'- cUGUCCGCGGGGCGGuuguccagguuGGACuGCaacagaGUCa -3'
miRNA:   3'- uACAGGCGCCCUGCC-----------CCUGuUGa-----CAG- -5'
17354 3' -58.6 NC_004367.1 + 115438 0.72 0.454292
Target:  5'- aAUGUCCGCGacAUGGGGACGAgUGg- -3'
miRNA:   3'- -UACAGGCGCccUGCCCCUGUUgACag -5'
17354 3' -58.6 NC_004367.1 + 115572 0.78 0.191943
Target:  5'- uUGUCCGCGaGACGGGGACG--UGUCc -3'
miRNA:   3'- uACAGGCGCcCUGCCCCUGUugACAG- -5'
17354 3' -58.6 NC_004367.1 + 55860 0.83 0.101656
Target:  5'- ---nCCGCGGGACGGGuACAACUGUCc -3'
miRNA:   3'- uacaGGCGCCCUGCCCcUGUUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 115489 0.85 0.066727
Target:  5'- -aGUCCGCaGGACGGGGACAGUUGUCc -3'
miRNA:   3'- uaCAGGCGcCCUGCCCCUGUUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 22306 0.9 0.031481
Target:  5'- cUGUCCGCGGGACGGGGACG--UGUCc -3'
miRNA:   3'- uACAGGCGCCCUGCCCCUGUugACAG- -5'
17354 3' -58.6 NC_004367.1 + 56085 0.91 0.026044
Target:  5'- aAUGUCCGCGGGACGGGGACG--UGUCc -3'
miRNA:   3'- -UACAGGCGCCCUGCCCCUGUugACAG- -5'
17354 3' -58.6 NC_004367.1 + 22514 0.91 0.026044
Target:  5'- aAUGUCCGCGGGACGGGGACG--UGUCc -3'
miRNA:   3'- -UACAGGCGCCCUGCCCCUGUugACAG- -5'
17354 3' -58.6 NC_004367.1 + 55839 0.94 0.016402
Target:  5'- ---nCCGCGGGACGGGGACAACUGUCc -3'
miRNA:   3'- uacaGGCGCCCUGCCCCUGUUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 115530 0.96 0.012149
Target:  5'- uUGUCCGCGGGACGGGGACAGUUGUCc -3'
miRNA:   3'- uACAGGCGCCCUGCCCCUGUUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 22264 0.98 0.008993
Target:  5'- cUGUCCGCGGGACGGGGACuACUGUCc -3'
miRNA:   3'- uACAGGCGCCCUGCCCCUGuUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 55814 1.06 0.002347
Target:  5'- gAUGUCCGCGGGACGGGGACAACUGUCc -3'
miRNA:   3'- -UACAGGCGCCCUGCCCCUGUUGACAG- -5'
17354 3' -58.6 NC_004367.1 + 22221 1.06 0.002347
Target:  5'- gAUGUCCGCGGGACGGGGACAACUGUCc -3'
miRNA:   3'- -UACAGGCGCCCUGCCCCUGUUGACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.