miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17354 5' -59.9 NC_004367.1 + 12742 0.68 0.622515
Target:  5'- cGGGACgaagAUucagGUCaugagccauggggaCGUGGGGCGGGGAa -3'
miRNA:   3'- -CCCUGa---UGa---CAG--------------GCGCCCUGCCCCUg -5'
17354 5' -59.9 NC_004367.1 + 115432 0.71 0.454435
Target:  5'- cGGACaaaUGUCCGCGacAUGGGGACg -3'
miRNA:   3'- cCCUGaugACAGGCGCccUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 115575 0.73 0.394794
Target:  5'- uGGGACuUAUUGUCCGCGGucUGaGGACa -3'
miRNA:   3'- -CCCUG-AUGACAGGCGCCcuGCcCCUG- -5'
17354 5' -59.9 NC_004367.1 + 26562 0.8 0.142932
Target:  5'- uGGGugUGguggcCUGUCCGCGGGGCGGuuguccagguuGGACu -3'
miRNA:   3'- -CCCugAU-----GACAGGCGCCCUGCC-----------CCUG- -5'
17354 5' -59.9 NC_004367.1 + 115474 0.8 0.142578
Target:  5'- uGGACaGCUgcccucaGUCCGCaGGACGGGGACa -3'
miRNA:   3'- cCCUGaUGA-------CAGGCGcCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 22215 0.83 0.088481
Target:  5'- --cGCUcagaUGUCCGCGGGACGGGGACa -3'
miRNA:   3'- cccUGAug--ACAGGCGCCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 115564 0.84 0.073907
Target:  5'- gGGGACagUUGUCCGCGaGACGGGGACg -3'
miRNA:   3'- -CCCUGauGACAGGCGCcCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 22508 0.9 0.028053
Target:  5'- uGGGCaaaUGUCCGCGGGACGGGGACg -3'
miRNA:   3'- cCCUGaugACAGGCGCCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 56079 0.9 0.028053
Target:  5'- uGGGCaaaUGUCCGCGGGACGGGGACg -3'
miRNA:   3'- cCCUGaugACAGGCGCCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 55864 0.91 0.023932
Target:  5'- cGGGACggguacaACUGUCCGCGGG-CGGGGACg -3'
miRNA:   3'- -CCCUGa------UGACAGGCGCCCuGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 115522 0.96 0.011671
Target:  5'- gGGGACagUUGUCCGCGGGACGGGGACa -3'
miRNA:   3'- -CCCUGauGACAGGCGCCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 55828 1.04 0.003411
Target:  5'- gGGGACaACUGUCCGCGGGACGGGGACa -3'
miRNA:   3'- -CCCUGaUGACAGGCGCCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 22256 1.1 0.001168
Target:  5'- gGGGACUACUGUCCGCGGGACGGGGACu -3'
miRNA:   3'- -CCCUGAUGACAGGCGCCCUGCCCCUG- -5'
17354 5' -59.9 NC_004367.1 + 22298 1.11 0.001021
Target:  5'- gGGGACUACUGUCCGCGGGACGGGGACg -3'
miRNA:   3'- -CCCUGAUGACAGGCGCCCUGCCCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.