Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17354 | 5' | -59.9 | NC_004367.1 | + | 12742 | 0.68 | 0.622515 |
Target: 5'- cGGGACgaagAUucagGUCaugagccauggggaCGUGGGGCGGGGAa -3' miRNA: 3'- -CCCUGa---UGa---CAG--------------GCGCCCUGCCCCUg -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 115432 | 0.71 | 0.454435 |
Target: 5'- cGGACaaaUGUCCGCGacAUGGGGACg -3' miRNA: 3'- cCCUGaugACAGGCGCccUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 115575 | 0.73 | 0.394794 |
Target: 5'- uGGGACuUAUUGUCCGCGGucUGaGGACa -3' miRNA: 3'- -CCCUG-AUGACAGGCGCCcuGCcCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 26562 | 0.8 | 0.142932 |
Target: 5'- uGGGugUGguggcCUGUCCGCGGGGCGGuuguccagguuGGACu -3' miRNA: 3'- -CCCugAU-----GACAGGCGCCCUGCC-----------CCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 115474 | 0.8 | 0.142578 |
Target: 5'- uGGACaGCUgcccucaGUCCGCaGGACGGGGACa -3' miRNA: 3'- cCCUGaUGA-------CAGGCGcCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 22215 | 0.83 | 0.088481 |
Target: 5'- --cGCUcagaUGUCCGCGGGACGGGGACa -3' miRNA: 3'- cccUGAug--ACAGGCGCCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 115564 | 0.84 | 0.073907 |
Target: 5'- gGGGACagUUGUCCGCGaGACGGGGACg -3' miRNA: 3'- -CCCUGauGACAGGCGCcCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 22508 | 0.9 | 0.028053 |
Target: 5'- uGGGCaaaUGUCCGCGGGACGGGGACg -3' miRNA: 3'- cCCUGaugACAGGCGCCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 56079 | 0.9 | 0.028053 |
Target: 5'- uGGGCaaaUGUCCGCGGGACGGGGACg -3' miRNA: 3'- cCCUGaugACAGGCGCCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 55864 | 0.91 | 0.023932 |
Target: 5'- cGGGACggguacaACUGUCCGCGGG-CGGGGACg -3' miRNA: 3'- -CCCUGa------UGACAGGCGCCCuGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 115522 | 0.96 | 0.011671 |
Target: 5'- gGGGACagUUGUCCGCGGGACGGGGACa -3' miRNA: 3'- -CCCUGauGACAGGCGCCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 55828 | 1.04 | 0.003411 |
Target: 5'- gGGGACaACUGUCCGCGGGACGGGGACa -3' miRNA: 3'- -CCCUGaUGACAGGCGCCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 22256 | 1.1 | 0.001168 |
Target: 5'- gGGGACUACUGUCCGCGGGACGGGGACu -3' miRNA: 3'- -CCCUGAUGACAGGCGCCCUGCCCCUG- -5' |
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17354 | 5' | -59.9 | NC_004367.1 | + | 22298 | 1.11 | 0.001021 |
Target: 5'- gGGGACUACUGUCCGCGGGACGGGGACg -3' miRNA: 3'- -CCCUGAUGACAGGCGCCCUGCCCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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