miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17357 3' -57.6 NC_004367.1 + 56988 0.66 0.84823
Target:  5'- cGGGcCUGgAGcCCCACGgccGGGCcuGGAGCc -3'
miRNA:   3'- -CCCuGAUgUU-GGGUGU---CCCG--CCUCGa -5'
17357 3' -57.6 NC_004367.1 + 23507 0.66 0.84823
Target:  5'- cGGGcCUGgAGuCCCACGgccGGGCcuGGAGCc -3'
miRNA:   3'- -CCCuGAUgUU-GGGUGU---CCCG--CCUCGa -5'
17357 3' -57.6 NC_004367.1 + 56809 0.66 0.84823
Target:  5'- cGGGcCUGgAGcCCCACGgccGGGCcuGGAGCc -3'
miRNA:   3'- -CCCuGAUgUU-GGGUGU---CCCG--CCUCGa -5'
17357 3' -57.6 NC_004367.1 + 56948 0.66 0.84823
Target:  5'- cGGGcCUGgAGcCCCACGgccGGGCcuGGAGCc -3'
miRNA:   3'- -CCCuGAUgUU-GGGUGU---CCCG--CCUCGa -5'
17357 3' -57.6 NC_004367.1 + 56908 0.66 0.84823
Target:  5'- cGGGcCUGgAGcCCCACGgccGGGCcuGGAGCc -3'
miRNA:   3'- -CCCuGAUgUU-GGGUGU---CCCG--CCUCGa -5'
17357 3' -57.6 NC_004367.1 + 69341 0.66 0.83208
Target:  5'- cGGGACcaaagGCAcuCCCAUAGGGCaaucgaaaaaGaGGGCUg -3'
miRNA:   3'- -CCCUGa----UGUu-GGGUGUCCCG----------C-CUCGA- -5'
17357 3' -57.6 NC_004367.1 + 69761 0.67 0.815216
Target:  5'- uGGcGCUACuACUaggaaACGGGGUGGAGUa -3'
miRNA:   3'- -CCcUGAUGuUGGg----UGUCCCGCCUCGa -5'
17357 3' -57.6 NC_004367.1 + 56869 0.67 0.815216
Target:  5'- cGGGcCUGgAGcCCCACGccGGGCcuGGAGCc -3'
miRNA:   3'- -CCCuGAUgUU-GGGUGU--CCCG--CCUCGa -5'
17357 3' -57.6 NC_004367.1 + 5217 0.67 0.7977
Target:  5'- cGGGccuagcacaaucACUGCGGCUgCGCAGGGUGGAu-- -3'
miRNA:   3'- -CCC------------UGAUGUUGG-GUGUCCCGCCUcga -5'
17357 3' -57.6 NC_004367.1 + 55822 0.67 0.779596
Target:  5'- cGGGACggggACAACuguCCGCGGGaCGGGGaCa -3'
miRNA:   3'- -CCCUGa---UGUUG---GGUGUCCcGCCUC-Ga -5'
17357 3' -57.6 NC_004367.1 + 107290 0.67 0.779596
Target:  5'- gGGGGCUGgGAgaCugGGGGCGGuaugguGCg -3'
miRNA:   3'- -CCCUGAUgUUggGugUCCCGCCu-----CGa -5'
17357 3' -57.6 NC_004367.1 + 121291 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 129598 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 126689 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 123779 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 120870 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 73769 0.68 0.75149
Target:  5'- -aGGCaUAUuuCCCACAGcGCGGGGCUa -3'
miRNA:   3'- ccCUG-AUGuuGGGUGUCcCGCCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 124200 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 127109 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5'
17357 3' -57.6 NC_004367.1 + 130018 0.68 0.75149
Target:  5'- aGGGACUaggccgGCGGgCCGCcuccGGGCcaGGGGCUg -3'
miRNA:   3'- -CCCUGA------UGUUgGGUGu---CCCG--CCUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.